RetrogeneDB ID:
retro_mputfur_1199
Organism:
Location:
GL897040.1:5850769-5851346 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.54 %
Coverage:
57.93 %
Frameshifts:
3
Stop codons:
7


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1199
TTAAAAAGCCATTATCAGAAACTGGCACTGAAGTGGCATCCAGGTAAAAAATCATGAGAA
TAAACAAGCAGGAGAGATAGAATTCAAACAAGTAGCTAAGGTATATGACATATTATTCAG
ATGCTAATAAATGAGACTCCTATGACAAATATGGTGAAGAAGGATTAGGTGGTGGAGGTG
GAAGTCATTTTGACAGTCTGTTTGAGTTGGGCTTCACCTTGCATAACTCAAATGATGCCT
TCACAGATTGATTGATTGAGTGAGTAAGTGGATGAGACTGATTTTTATTGAACTTCTTTG
AAAACCCACTTGTGGACTTTTGTGGGGACTCACAGGGGGTGCCCCAAAGAAGCTGAGGCA
GAGAATTGTTTTTCACTGTCTTCAGTGGATTTCTGCATTTCGAAGGGAATTCGCTCTTTC
CGATATAGGATTTATGTCTTTAGGTTCACTGGGTCATGGAAGCCTCACTTCATTCTCTTC
CATGTCCTTTTAGGATAGTTCGACAGGCAGCTTCAAATCCATATCAGCTTTTACTAAAAT
TGTTAGTGGCAGGAAACTCACTGCAAAGAGAATAATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IKKAYRKLALKWHPDK-NPENKEEAERKFKQVAEAYEVL-SDAKKRDIYDRYGKEGLNGGGGGIHFDNPFEFGFTFRNPDDVFR----EFFGGRDPFSFD
.K..Y.KLALKWHP.K.N.ENK...E..FKQVA..Y..L.SDA.K.D.YD.YG.EGL.GGGGG.HFD..FE.GFT..N..D.F.....E...G.D.F...
Retrocopy
LKSHYQKLALKWHPGK\NHENKQAGEIEFKQVAKVYDIL\SDANK*DSYDKYGEEGL-GGGGGSHFDSLFELGFTLHNSNDAFTD*LIE*VSG*D*FLLN


Parental protein
FFEDPFEEFFGSRRG-PRGSRNRSTGSFFSAFSGFPSFGGG-FPAFDSGFTSFASPGHGGLTSFSSAAFGGSGMGNFKSISTSTKMVNGRKITTKRIV
FFE.P...F.G...G.P..S..R....FF..FSGF..F.G..F...D.GF.S..S.GHG.LTSFSS..F..S..G.FKSIS..TK.V.GRK.T.KRI.
Retrocopy
FFENPLVDFCGDSQGVPQRS*GREL--FFTVFSGFLHFEGN/FALSDIGFMSLGSLGHGSLTSFSSMSF*DSSTGSFKSISAFTKIVSGRKLTAKRIM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide