RetrogeneDB ID:
retro_mputfur_1200
Organism:
Location:
GL897041.1:1440530-1440989 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.21 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
HN1
Parental gene aliases:
No gene alias available
Parental gene description:
hematological and neurological expressed 1 [Source:HGNC Symbol;Acc:14569]

Genomic region (view in browser)





>retro_mputfur_1200
ATGACCACCACCACCCCCTTCAAGGGAGTCAATCCCAACAGCAGGAACGGCTCCCGGGTA
TTGCGGCCTCCAGGCGGTGGATCCAATTTTTCATTAGGTTTTGATGAACCAAAAGAACAG
CCTGTGAGGAGGAACAAAGGGGCATCGAGCATCTTTGGGACACCTGAGGAAAATCCTCCT
TCATGGGCCAAGTCGGCAGGTGCCAAGTCTAGTGGTGGCAAATAGGACTCTGAGTCATCT
GGACCCCAGAGAAGGAACTCTTCTGAAGCATATGCTGGAGACTTCTTAGATCTGAAGGGA
GAAGGCGACATTCATGAAAACATGGACACAGACTTGCAGGCCAGCCTGGGGCAGAGTGAG
AAGCCTGTGCCTGCTGCCCCTGTGCCCAGCCCAGTGGCTCCGGCCCTAGTGCCGTCCCGA
AGAAATTCCCCTGGCGGCAAGTCCAGCCTCGTCCTGGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRRNKMASSIFGTPEENPPSWAKSAGAKSSGGRQDSESSGPQRRNSSEANAGDFLDLKG
MTTTT.FKGV.PNSRN.SRVLRPPGGGSNFSLGFDEP.EQPVRRNK.ASSIFGTPEENPPSWAKSAGAKSSGG..DSESSGPQRRNSSEA.AGDFLDLKG
Retrocopy
MTTTTPFKGVNPNSRNGSRVLRPPGGGSNFSLGFDEPKEQPVRRNKGASSIFGTPEENPPSWAKSAGAKSSGGK*DSESSGPQRRNSSEAYAGDFLDLKG


Parental protein
EGDIHENVDTDLQASLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG
EGDIHEN.DTDLQASLGQS.EKPVPAAPVPSPVAPA.VPSRRN.PGGKSSLVLG
Retrocopy
EGDIHENMDTDLQASLGQS-EKPVPAAPVPSPVAPALVPSRRNSPGGKSSLVLG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide