RetrogeneDB ID:
retro_mputfur_1203
Organism:
Location:
GL897041.1:5197213-5197671 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
72.9 %
Coverage:
96.25 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_1203
ACACAAAGAGAAAGAGGAGAAGTACCCGCTGTGTTCTCTAGGCCTTGTAGAAAACATGGT
GGTGTTCCTTTGGCCACATACATTCAAATCTATAAGAAATATGATATTGGGGACCTCAGG
GGAATGGGCACTGTTCAAAGAAGAATGCTCCACAAATGTTACCATGGCAACACTGAAAGA
GTCTATAAGGTTACTCAGCATGCTGTTGGCATGGTTGTAAACAAGTTAAAGGCAAGATTC
TTGCCAAGAGAATTAATGTGTGCGTTGAGCATATTGAACACTCAAGGAGCCGAAATAGCT
TCCTGAAGCCTGTAAAGGAAAATGATCAGGAAAAGAAGGAAGCCAAAGAAAAAGGTACTT
GGGGTCAATGGAAACACCAGTATGCTCCAGCCAGAGAAGCACACTTTGTGAGAACTGATG
GAAAGGAGCCTGAACTGCTAGAACCCATTCCCTATGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGK-ILAKRINVRIEHIKHSKSR
T...R......FSRP.RKHG.VPLATY..IYKK.DI.D..GMGTVQ..M.HKCYHG.T.RVY.VTQHAVG.VVNK..K...ILAKRINV..EHI.HS.SR
Retrocopy
TQRERGEVPAVFSRPCRKHGGVPLATYIQIYKKYDIGDLRGMGTVQRRMLHKCYHGNTERVYKVTQHAVGMVVNK-LKAR/ILAKRINVCVEHIEHSRSR


Parental protein
DSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE
.SFLK.VKENDQ.KKEAKEKGTW.Q.K.Q.AP.REAHFVRT.GKEPELLEPIPYE
Retrocopy
NSFLKPVKENDQEKKEAKEKGTWGQWKHQYAPAREAHFVRTDGKEPELLEPIPYE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide