RetrogeneDB ID:
retro_mputfur_1205
Organism:
Location:
GL897041.1:5691843-5692611 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.56 %
Coverage:
61.28 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1205
AATCGTAGAGTGAATATAACCAGAAGCCATATGCCATGTATTCTGCCCTGGCTGCCTCAG
CCTTACCAGTGCCGGTCATGTCTAATGATCATCATAATGAAGAAGTTCCTGAACTTCCTT
TGGTGGTTGACAATAAAGGTGAAGGCTACAAGAATACCAAGGCTGTTTTGTTTTGAAAGA
AACTTAAAGCCTGGAATTATATCAAAAAGGTCTACGCCTCTCAGCAAATGAGAGCTGTCA
AGGGCAAAATGAGAAACCATCATTCTGTCCAGTGCAGGGGACCCTGCATCATCTACAATG
AAGACAATGGTATCATCAAGGCCTTCAGAAACATCCCAGGCATTACTTGACTTAATGCAG
GCAAACTGAACATTTTGAAACTTGCTCCTAGTGGGCAAGTGGGACGTTTCTACATTTGGA
CTGAAAATGCTTTCCACAAGCTAGGCAATCTATATGGAACTTGGCATAAGACTGCCTCCT
TCAAGAGTAACTACAGCTTTACCACAGATAAGGTATTAACACAGACCTTAGCAGAATCTT
GAAAAGTCCAGGGATCCAAAGAACCCTCTGAGCACTACCCAAGAAGATGCATCACAGGGA
CCTGAAGAAGAATCCACTGAAGAACCTGAGAATCATGTGGAAGCTAAACCCATATGCAAA
AAATCTGTGCCAGAATACCATTCTTTGCCAGACCAAAATCACAAACTCCAGATGGATAAG
GCAGCAGCAGCATTAGAAGCCAAATATGATCAGAAGGGGTTTCTAGGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HRRVNTT-QKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII
.RRVN.T.QK.YA..SALAASALP..VMS..H..EEVPELPLVV..K.EGYK.TK.AVL..KKLKAWN.IKKVYASQ.MRA.KGKMRN....Q.RGPCII
Retrocopy
NRRVNIT/QKPYAMYSALAASALPVPVMSNDHHNEEVPELPLVVDNKGEGYKNTK-AVLF*KKLKAWNYIKKVYASQQMRAVKGKMRNHHSVQCRGPCII


Parental protein
YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKML-NTDLSRILKSPEIQRALRAPRKKI
YNEDNGIIKAFRNIPGIT.LN..KLNILKLAP.G.VGRF.IWTE.AF.KL..LYGTW.K.AS.KSNY.....K.L.NTDLSRILKSP.IQR.L.A..KK.
Retrocopy
YNEDNGIIKAFRNIPGIT*LNAGKLNILKLAPSGQVGRFYIWTENAFHKLGNLYGTWHKTASFKSNYSFTTDKVL/NTDLSRILKSPGIQRTL*ALPKKM


Parental protein
HRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAK-NHKLRMDKAAAALEAKSGEKGVPG
H.R.LKKNPLKNLRIM.KLNPYAK....NTIL.Q.K.NHKL.MDKAAAALEAK...KG..G
Retrocopy
HHRDLKKNPLKNLRIMWKLNPYAKNLCQNTILCQTK/NHKLQMDKAAAALEAKYDQKGFLG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide