RetrogeneDB ID:
retro_mputfur_1208
Organism:
Location:
GL897042.1:4809925-4810903 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
64.9 %
Frameshifts:
2
Stop codons:
6


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1208
GAGAAGGAGCAGTTGGAAACCCTTGACAAGTTTGCCTCCTTCATCAACAAGGTATGGCAC
CTGGAGCAGCAGAACAAAATTCTAGAGACCAAGTGGAGCCTCGTGCAGCAGCAGTGAACA
GCTTGGAGCAACAATGACCACGTGTTTGAGAGCTATCACAACAACCTTTGGTGGCAGCTA
GACCTCCTGGGCCAGGAGAAGCTGACGCTGGAAGTGGAACTTGGCAACATGCAGGGACTG
GTGGAGGATTCAAAAATAAGTAGTAGGAGGAGATCAAAGAGCATGCAGACAGGGAGTATG
AATGTGTCCTAATCAAGCAGGAGGTGGATGAAACTTACATAAACAAGGTAGAGCTGCAGT
CTCACCTCAAAGGATGGACCAACAAGATCAGCTTCTTAAGGCAGCTGTATGAAGAGGTCA
GTGAGACCCAGACTCAGATCTCAGACACATTCGTGGTCCTGACCGTAGACAACAGCTCCT
CCATGGATCTGGACAGCCTCATTGCCAAGGTCAAGGTCCAGTACAAGGACATCACCAACC
ATAGCCAGGCTGAGGCTGACACCATGTACTAGATCAAGTACAAGGAGCTGTGGATATTGA
CTGGAAAGCACGGGGATGGCTGCTGTCACATGAAGATGGAGATTTCCGAGATGAACAACA
ACATCAGCCAACTCCAGGCTGAGATGGAGGGCCTCCAAGGCCAGAGGGCTTCCCCCAGAG
ACCACCACCACTGCTGCAGAGCAGTGTGGGGAGCTGGCTCTTAAGGGTGCCAATGCCAAC
CTGGCCGAGCTGGAGGCCACCCTGCAGTGAGCCAAGCAGGACATGGCATGGCAATTGCAT
GAGTAAGAGGAATTCGTGAACGTCAAGCTGGCCCTGGACATCGAGATCACCACTTACTGC
AAGCTGCTGGAGGGCAAGGAGAGCCATCTGGAGTCTGGGATGCAGAAGGTGACTCAGGTG
GACTCAGCCTACAGTGGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EKEQIKTLNNKFASFIDKVRHLEQQNKVLETKWSLLQQQKTARSNIDNMFESYISNLRRQLDTLGQEKLKLEVELGNMQGLVED-FKNKYEEEIKERADM
EKEQ..TL..KFASFI.KV.HLEQQNK.LETKWSL.QQQ.TA.SN.D..FESY..NL..QLD.LGQEKL.LEVELGNMQGLVED.FKNK..EEIKE.AD.
Retrocopy
EKEQLETLD-KFASFINKVWHLEQQNKILETKWSLVQQQ*TAWSNNDHVFESYHNNLWWQLDLLGQEKLTLEVELGNMQGLVED/FKNK**EEIKEHADR


Parental protein
ENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDLDGIISEVKAQYEDIANRSRAEAETMYQIKYEEL
E.E.VLIK..VDE.Y.NKVEL.S.L.G.T..I.FLRQLYEE...E.Q.QISDT.VVL..DNS.S.DLD..I..VK.QY.DI.N.S.AEA.TMY.IKY.EL
Retrocopy
EYECVLIKQEVDETYINKVELQSHLKGWTNKISFLRQLYEE-VSETQTQISDTFVVLTVDNSSSMDLDSLIAKVKVQYKDITNHSQAEADTMY*IKYKEL


Parental protein
QTLAGKHGDDLRRTKTEISEMNRSISRLQAEIEALKNQRAA-LEAAIADAEQRGELAIKDANGKVAELEAALQRAKQDMARQLREYQELMNVKLALDIEI
..L.GKHGD.....K.EISEMN..IS.LQAE.E.L..QRA...E.....AEQ.GELA.K.AN...AELEA.LQ.AKQDMA.QL.E..E..NVKLALDIEI
Retrocopy
WILTGKHGDGCCHMKMEISEMNNNISQLQAEMEGLQGQRAS\PETTTTAAEQCGELALKGANANLAELEATLQ*AKQDMAWQLHE*EEFVNVKLALDIEI


Parental protein
ATYRKLLEGEESRLESGMQNMSIHTKTTSGFSG
.TY.KLLEG.ES.LESGMQ.....T...S..SG
Retrocopy
TTYCKLLEGKESHLESGMQKV---TQVDSAYSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide