RetrogeneDB ID:
retro_mputfur_1209
Organism:
Location:
GL897043.1:3669232-3669859 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.6 %
Coverage:
79.18 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1209
GCCAAAGACAAGGAGTGGATCCCCATCGCTAAGCTGGGCCTCCTGGTCAAGGACATGAAA
ATGCAGTCCCTGGAGGAGATGTGTTTCTCCTCCCTGCCCATCAAGGAAATCTGGGATCGT
TGACTTTCCCTGGGGGCAACCCTCAAGGATGAGGTTATGCTGGTGCAAAAGCAGACCTAT
GCTGGCCAGTGGACCAAGTTCAAGGCATTTGTTGCCATCAGAGATGACAATGGACACGGC
TGTCTGGGTGTTAAGTAGTCCAAAGAGGTCGCCACTGCCATCCATGGGGCCATGATCCCT
GACAAGCTTTCCAAAGACCTGTGTGGTGAGGCTACTTGGGGAACAAGATCGGCAAGCCCC
ACATTGTCCCATGCATGGTGACCGGCCACCGTGCCTCTGTGCTGGGGCGCCTCACTCCCG
ACCCTAGGGGCACTGGCACTGCCTCAGCTCCTGTACCTACGAAGCTATTGATGGTGGCCA
GTACAGACAACAGCTCCCCCTTAGCCAGGGACTGCACTGCCACCCTGGGCAACTTCGCCA
AAGCCACTTTTGATGTCTTTCCGGAGTCTTACAGCTGGCTCCCCCTGACTCTGGAAACAG
ACTGCATTCACCGAGTTTCCCAATCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKE-SEIIDF-FLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIR
A.DKEWIP..KLG.LVKDMK..SLEE....SLPIKE.S.I.DF..LGA.LKDEV...M.VQKQT.AGQ.T.FKAFVAI.D.NGH..LGVK.SKEVATAI.
Retrocopy
AKDKEWIPIAKLGLLVKDMKMQSLEEMCFSSLPIKE\SGIVDF/SLGATLKDEV---MLVQKQTYAGQWTKFKAFVAIRDDNGHGCLGVK*SKEVATAIH


Parental protein
GAIILAKLSIVPVRRGYW-GNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYL
GA.I..KLS........W.GNKIGKPH.VPC.VTG...SVL.RL.P.PRGTG..SAPVP.KLLM.A..D.....AR.CTATLGNFAKATFD.....YS.L
Retrocopy
GAMIPDKLSKDLCGEATW/GNKIGKPHIVPCMVTGHRASVLGRLTPDPRGTGTASAPVPTKLLMVASTDNSSPLARDCTATLGNFAKATFDVFPESYSWL


Parental protein
-TPD-LWKETVFTKSPYQ
..PD.LWK.T.FT..P.Q
Retrocopy
/PPD/LWKQTAFTEFPNQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide