RetrogeneDB

RetrogeneDB ID:
retro_mputfur_1211
Organism:
Ferret ( Mustela_putorius_furo )
Location:
GL897043.1:2235262-2236747 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
ENSMPUG00000018679
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.34 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
ENSMPUG00000001374
Parental gene symbol:
SLC19A3
Parental gene aliases:
No gene alias available
Parental gene description:
solute carrier family 19, member 3 [Source:HGNC Symbol;Acc:16266]

Genomic region (view in browser)





>retro_mputfur_1211
ATGGATTGTTTCAGAACTTCACCAAGTCATTCCTGGATTTATCCCACAGTGATCCTGTGC
TTATTTGGATTTTTCTCCATGATGAGACCCTCAGAACCCTTTTTTATACCGTATTTATCT
GGACCAGATAAAAACCTGACCAGTTCAGAAATCACAAATGAGATCATCCCAATTTGGACA
TACTCTTACCTGGTGCTGCTGCTCCCCGTTTTTGTCCTGACTGACTACGTCCGCTACAAG
CCAGTCATCATCCTGCAAGGAGTCAGCTTCATCATCACGTGGTTGCTGCTCTTGTTCGGC
CAGGGAGTGAAGGCCATGCAGGTGGTGGAGTTCTTCTATGGGATGGTCACCGCCACCGAG
GTAGCATACTTTGCCTACATTTACAGCATGGTCAGCCCCGAGCACTACCAGAAAGTGAGT
GGCTACTGCAGGAGCATCACACTGGTGGCCTACACAGTGGCCTCAGTGCTGGCCCAGCTC
CTGGTGTCCCTGGCCAGCCTCTCGTACTTTTACCTCAACGTCATATCCTTGGCTTCCATT
TTTGTGGCCTTCATTTTGTCCCTTTTCCTGCCAATGCCCAAGAAGAGCATGTTTTTCCAT
GCAAAATCCAGCAAAGGACTACGGAAGCAACGGGACAAAAATGAGGCATCAGATGCACCT
TACAAAATTAACACACCAGGTGGTGAAGAGAATCCCACTTCAGAAATACCCACCATTTCA
GGGAACCTGGATGGTGGTCCTTTGAGCAGCCCGATGCTGCAAAATGTAGCGTTGAATGTT
TTTGTGCAGTGGTTCCAAGATCTGAAGGAGTGCTACTCTTCCAAGCGACTATTTTACTGG
TCCCTATGGTGGGTCTTCTCCACAGCAGGTTTTAACCAAGTTTTGAACTATGTTCAAATC
CTGTGGGATTACAAGTCACCATCCCAGAGTTCTTTTGTCTATAATGGGGCAGTAGAAGCT
CTTGCAACCTTTGGAGGGGCCGTGGCTGCCTTTGCAATGGGCTACGTGAAAGTCAACTGG
GATCTTCTGGGGGAGCTCGCTCTAGCCATCTTCTCCATCATTAGCGCAGGCTCTCTGTTT
CTCATGCATTACACGACCGACATCTGGGCGTGTTATGCTGGCTATCTGATATTCAAGTCT
AGCTATATGCTGCTTATAACCATAGCAGTATTTCAGATCACAGTTGATCTGAGTGTGGAA
CGCTACGCCCTGGTATTTGGAATGAACACCTTCATGGCACTCGTAATTCAGACCATTATG
GCAGTGATTGTTGTAGATCAGAAAGGACTCAACCTGCCAATCAGCATTCAGTTTTTAGTT
TATGGGAGTTATTTTGCAGTTATTGCTGCCATTTTTCTAATGAGAAGCACATATATCATC
TACTCAACCAAATGTCAAAAGCAAGCACAGAGCTCTCCAGCTAGTCAGAATCCAGATGAG
CTCCACCCAGAGGGACCAAGGAATGTCATTACAGGAACAAAGCTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDCFRTSPSHSWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSSEITNEIFPIWTYSYLVLLLPVFILTDYVRYKPVIILQGVSFIITWLLLLFG
MDCFRTSPSHSWIYPTVILCLFGFFSMMRPSEPF.IPYLSGPDKNLTSSEITNEI.PIWTYSYLVLLLPVF.LTDYVRYKPVIILQGVSFIITWLLLLFG
Retrocopy
MDCFRTSPSHSWIYPTVILCLFGFFSMMRPSEPFFIPYLSGPDKNLTSSEITNEIIPIWTYSYLVLLLPVFVLTDYVRYKPVIILQGVSFIITWLLLLFG


Parental protein
QGVKAMQVVEFFYGMVTATEVAYYAYIYSVVSPEHYQKVSGYCRSITLVAYTAASVLAQLLVSLASLSYFYLNVISLASVSVAFVLSLFLPMPKKSMFFH
QGVKAMQVVEFFYGMVTATEVAY.AYIYS.VSPEHYQKVSGYCRSITLVAYT.ASVLAQLLVSLASLSYFYLNVISLAS..VAF.LSLFLPMPKKSMFFH
Retrocopy
QGVKAMQVVEFFYGMVTATEVAYFAYIYSMVSPEHYQKVSGYCRSITLVAYTVASVLAQLLVSLASLSYFYLNVISLASIFVAFILSLFLPMPKKSMFFH


Parental protein
AKSSKEIQKQPNKNEVSDASYKINTPGGEEKPASEISTISGNLDGGPLSSPMLRNVALNVFVQWFQDLKECYSSKRLFYWSLWWAFSTAGFNQVLNYVQI
AKSSK...KQ..KNE.SDA.YKINTPGGEE.P.SEI.TISGNLDGGPLSSPML.NVALNVFVQWFQDLKECYSSKRLFYWSLWW.FSTAGFNQVLNYVQI
Retrocopy
AKSSKGLRKQRDKNEASDAPYKINTPGGEENPTSEIPTISGNLDGGPLSSPMLQNVALNVFVQWFQDLKECYSSKRLFYWSLWWVFSTAGFNQVLNYVQI


Parental protein
LWDYKAPSQSSFVYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALAIFSIISAGSLFLMHYTTDIWACYAGYLIFKSSYMLLITIAVFQIAVNLSVE
LWDYK.PSQSSFVYNGAVEA.ATFGGAVAAFA.GYVKVNWDLLGELALAIFSIISAGSLFLMHYTTDIWACYAGYLIFKSSYMLLITIAVFQI.V.LSVE
Retrocopy
LWDYKSPSQSSFVYNGAVEALATFGGAVAAFAMGYVKVNWDLLGELALAIFSIISAGSLFLMHYTTDIWACYAGYLIFKSSYMLLITIAVFQITVDLSVE


Parental protein
RYALVFGMNTFMALVIQTIMTVIVVDQKGLNLPISIQFLVYGSYFAVIAAIFLTRSTYIIYSTKCQKQAQSSPASQNPDELHPEGPRNVITGTKL
RYALVFGMNTFMALVIQTIM.VIVVDQKGLNLPISIQFLVYGSYFAVIAAIFL.RSTYIIYSTKCQKQAQSSPASQNPDELHPEGPRNVITGTKL
Retrocopy
RYALVFGMNTFMALVIQTIMAVIVVDQKGLNLPISIQFLVYGSYFAVIAAIFLMRSTYIIYSTKCQKQAQSSPASQNPDELHPEGPRNVITGTKL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u