RetrogeneDB ID:
retro_mputfur_1212
Organism:
Location:
GL897043.1:2615202-2615650 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.74 %
Coverage:
56.88 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1212
GAGATCTATTTCTTCTCCTTGCACATCAAGGAATCTGAGATCACTGATTTTTTCCCTGGG
AACATCAAGGATGAGGTTTTGAAGACTATGCTGGTGCAAAAGCAGATCTGTGTTGGCCAG
TGGACCAAGTTCAAGGCATTTGTTGCCATTGGAGATGACAATGGATACAACGCTCTAGGT
GTTAAATGGTTCAAAGAGGTTGCCATCTGTGGGGTCATGATCCCTGACAAGCTTTCCATA
GACCTGTGTGGTGAGGCTACATGGGGAACAAGATCGGCAAGCCCCACACTGTCCCATGCA
TGGTGACCGGCCACTGTGGCTCTGTGCTGGGGCGCCCCATCCCTGGCCCCAGGGGCACTG
GCACTGCCATAACTCCTATACCCAAGAAGCTACTGATGGTGGCCAGTACAGATGACAGGT
GCCCTCAGCCAGGGACTGCACTGCCACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIV-PVRRGYWGNKIGKPH
EIY.FSL.IKESEI.DFF.G...KDEVLK.M.VQKQ...GQ.T.FKAFVAIGD.NG...LGVK..KEVA..I.G..I..KLSI..PV..GY.GNKIGKPH
Retrocopy
EIYFFSLHIKESEITDFFPG-NIKDEVLKTMLVQKQICVGQWTKFKAFVAIGDDNGYNALGVKWFKEVA--ICGVMIPDKLSID/PVW*GYMGNKIGKPH


Parental protein
TVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD-CYTSARGCTAT
TVPC.VTG.CGSVL.R.IP.PRGTG....P.PKKLLM.A..DD....SAR.CTAT
Retrocopy
TVPCMVTGHCGSVLGRPIPGPRGTGTAITPIPKKLLMVASTDD/QVPSARDCTAT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide