RetrogeneDB ID:
retro_mputfur_1213
Organism:
Location:
GL897043.1:4076333-4077108 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.75 %
Coverage:
94.85 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
C1QBP
Parental gene aliases:
No gene alias available
Parental gene description:
complement component 1, q subcomponent binding protein [Source:HGNC Symbol;Acc:1243]

Genomic region (view in browser)





>retro_mputfur_1213
GCCATGCCTGCCCTCTTGTCTCAGCCCACGCGGCTGCCTTCGCCACTGCAGCCCATGCAC
CCCAGGCCATACATGCAGCCCTTTGTGCGGCTCCAGGTGGCAAGGGCCCATGCTGCCTAC
GGTCTCCTGCGCTCTCCTGGGCCCTGCGGCTGCAGCACACTGCACACCCAGGGGCACAGA
GCTTTTGTTGAATTGCTGAATGATGACATTGAGGAGGAAATGGAGATACCAAAGCGTAAT
TACCTCCCCAAGAGTTCTGGAAGTTGGGAGCTGGAAGTAGATGGGTCAGAAGCCAAGTTT
TTGCAGAAAGTTGCCGGAGAGAAGATCACTGTGGCTTTCCACGTTGACAGTAGTATCCTG
CCAACATTGGATGGGGAGGAGGAGCCCTCCAAGGGCAGAAGGTTGAAGAACAGCCTGATT
GACATCCATTCCCAGTTTTGTGGTAGAAGTTGTGAGGACTTGTGGCAAGAAGCCCCCGGT
GCTGGACTGTTCCTGTCCAGAAGATGAGACTAGGCAAGAAGAGGAGGTCCAGAGTGACAC
TGTCTCCATCAGGGAAGTGAGCTTTCAGTCTGTTGAGTCTGAGTGGAAGGATCTGAATTA
CACAGTCAACACTGATCCCCTGGACTGGGCCTTATATGACTACCTGATGGATTTCCCGGC
AGATGGATGGGTGGGTAACACTTCTGCAGATGAGTTGGTAGAGCTCCGCACAGACCTGGA
GCACCGGGAATACATTCCTTTAATCTACGATCACAAACATTTTGTCAGAAGCCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AAAVLRSAPAPPPRPL--LQPAP--RPCVR-PFGSLRVRAGLLRSRGPCGCGCGALHTQGDKAFVEFLSDEIKEERKIQKHKSLPKMSGGWELEVNGTEA
A...L.S.P...P.PL....P.P...P.VR..........GLLRS.GPCGC....LHTQG..AFVE.L.D.I.EE..I.K...LPK.SG.WELEV.G.EA
Retrocopy
AMPALLSQPTRLPSPLQPMHPRPYMQPFVRLQVARAHAAYGLLRSPGPCGCS--TLHTQGHRAFVELLNDDIEEEMEIPKRNYLPKSSGSWELEVDGSEA


Parental protein
KLVRRVAGEKVTVTFNTNNSIPPTFDGEEEPS-QGQKAEEQEPE-LTSTPNFVVEVIKDGGKKALVLDCHYPEDEVGQEEEEESDIFSIREVSFQAVGES
K....VAGEK.TV.F....SI.PT.DGEEEPS.QGQK.EEQ.P..LTS.P.FVVEV....GKK..VLDC..PEDE..QEEE..SD..SIREVSFQ.V.ES
Retrocopy
KFLQKVAGEKITVAFHVDSSILPTLDGEEEPS/QGQKVEEQ-PD/LTSIPSFVVEVVRTCGKKPPVLDCSCPEDETRQEEEVQSDTVSIREVSFQSV-ES


Parental protein
EWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHREYIAFLEDLQGFVKTQ
EWKD.NYT.NTD.LDWALYD.LMDF.AD..V.NT.ADELVEL.T.LEHREYI....D...FV..Q
Retrocopy
EWKDLNYTVNTDPLDWALYDYLMDFPADGWVGNTSADELVELRTDLEHREYIPLIYDHKHFVRSQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide