RetrogeneDB ID:
retro_mputfur_1214
Organism:
Location:
GL897043.1:5230501-5231038 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
66.49 %
Coverage:
66.91 %
Frameshifts:
5
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1214
CTCAAGGAATCTGAGATGGTTGACTTTTCCTGGGGACACCCATCAAGGATAAGGTTCTGA
AGACTATGCAGGTGCAAAAGCAGATCTGTGCTGGCCATTGGACCAAGTTCAAGGCATTTG
TTGCCATCGGAGATGACAATGGACATGGCGGTCTGGGGGTTAAATGTTCCAAAGAGGTCG
CCACTGCCATCCATGGGGCCATGATCCCTAACAAGCTTTCCATCGACCTGTGTGGTGAGG
TGACTCGGGGAACAAGATTGGCAAGCTCCATGCTGTCCCATGCATGGTGACCGGCCACTG
TGGCTCTGTGCTAGGGTGCCTCACTCCTGCCGCCAGGGGTTGTTGGCACTGCCTCAGCTC
CTGTACCCAAGAAGCTACTGATACTGGCCAGTACAGACAACAGGTCCCCTTCAGCCAAGG
ACTGCACTGCCACCCTGGGCAAGTTCGCCAAGGCCACTTTTGATGTCATAACCAAGTCTT
AGAGCTAGCTCACCCTGACTCTGGAAACAGACTACGTTCACCAAGTTTCCCCATCGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IKESEIIDF-FLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSI-VPVRRGYWGNKIGKPHTVPCKVT
.KESE..DF.FLG...KD.VLK.M.VQKQ..AG..T.FKAFVAIGD.NGH.GLGVKCSKEVATAI.GA.I..KLSI..PV..G..GNKIGK.H.VPC.VT
Retrocopy
LKESEMVDF/FLGTPIKDKVLKTMQVQKQICAGHWTKFKAFVAIGDDNGHGGLGVKCSKEVATAIHGAMIPNKLSI/RPVW*GDSGNKIGKLHAVPCMVT


Parental protein
GRCGSVLVRLIPAPRG-TGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLT-PD-LWKETVFTKSPYQ
G.CGSVL..L.PA.RG..G..SAPVPKKLL..A..D....SA..CTATLG.FAKATFD.I.K..S.LT.PD.LWK.T.FTK.P..
Retrocopy
GHCGSVLGCLTPAARG\VGTASAPVPKKLLILASTDNRSPSAKDCTATLGKFAKATFDVITKS*S*LT/PD/LWKQTTFTKFPHR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide