RetrogeneDB ID:
retro_mputfur_1221
Organism:
Location:
GL897045.1:4963468-4963804 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.1 %
Coverage:
72.15 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL19
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L19 [Source:HGNC Symbol;Acc:10312]

Genomic region (view in browser)





>retro_mputfur_1221
ATGCTCGGCTTTCAGAATAGGCTTTCCTCTAGTGTCCTCCACTATGGCAAAACAAAGGTC
TGGTTGGACCCCAATGAGATGAATGAAATCACCAATGCCAACTCCTCTCAGCAGATCCAG
AAAATGATCAAAGATGGGGCTGATCATCTGGAAGCCTGTCCATTCCTGGAACTGCTGCCA
GAAAAACACTTTGACCCACCAGAGGGCAGGCATATGGACATTGATAAGAGAAAATGTACT
GCCAAGTCTTGAATTCCTGAGAAGGTAACCTGGTTGAAGAGGATGAGAATTCTGCACCAA
CTGCTCAGAAGATACCAAGAATCTAAGAAGATTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKD-GLIIRKPVTVHSRARCRKNTLARRK-GRHMGIGKRKGTANARMPEKVTWMRRMR
ML..Q.RL.SSVL..GK.KVWLDPNE.NEI.NANS.QQI.K.IKD.GLII.KP..VHS...C.KNTL.....GRHM.I.KRK.TA....PEKVTW..RMR
Retrocopy
MLGFQNRLSSSVLHYGKTKVWLDPNEMNEITNANSSQQIQKMIKD\GLIIWKP--VHSWNCCQKNTLTHQR/GRHMDIDKRKCTAKS*IPEKVTWLKRMR


Parental protein
ILRRLLRRYRESKKID
IL..LLRRY.ESKKID
Retrocopy
ILHQLLRRYQESKKID


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide