RetrogeneDB ID:
retro_mputfur_1223
Organism:
Location:
GL897045.1:4604507-4605064 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.1 %
Coverage:
98.96 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1223
TCAGCTCAGAGGAGACAAAGGTGCAACTTTCTTTGGTTTTCAGATTTGAGGTTCATCCAA
CACCAGCCACCTTTACCATACCACCTAAGTTCAACCCAAATGAATCAAATTTGTGTATCT
GTTGTGTACCTGTGGAGAATGCAGTGTGATATCTGTCCTGGCCCCAAAAATTGCCCCCTG
GGTCTGTCTCCATAAAAGCTTGGTGATGACTTCACCAAGGCAACTGGTGATTGAAGGGTC
TGAGGATCACAGTGAAACTGACCATTCAGAACGGACTGGCCCAGATTGAAATAGTACCTT
CTGCTTCTGCTCTGTTTATCAAAGCTCTCACCAAACTACCAATAGGCAGAAAGAAGCAGA
AAAACATTAAACACAGTGGAAACATCACATTTTACAAAATTGTCAGTAGATGCAGAACCA
ATCTTTTGCCAGAGAACTCTCTGGAACCATTACCATCTGATACCCTGGGGACTGCCCAGT
CTGTGGGCTGCAGTGTTGATGGCTGCCATGCTCATGACATCATATATAACATCAATGGTG
GTATGGTGGAATGCCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SARRRQRCNSLRSSRIR-VHPTPATSAMPPKFDPNE-IKVVYLRCTGGEVGATSALAPKIGP-LGLSPKKVGDDIAKATGD-WKGLRITVKLTIQNRQAQ
SA.RRQRCN.L..S..R.VHPTPAT...PPKF.PNE.IK.VYL.CT.GE....S.LAPKI.P.LGLSP.K.GDD..KATGD..KGLRITVKLTIQN..AQ
Retrocopy
SAQRRQRCNFLWFSDLR/VHPTPATFTIPPKFNPNE/IKFVYLLCTCGECSVISVLAPKIAP/LGLSP*KLGDDFTKATGD/LKGLRITVKLTIQNGLAQ


Parental protein
IEVVPSASALIIKALKEPPRDRKKQKNSAVKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP
IE.VPSASAL.IKAL...P..RKKQKN...KHSGNITF..I....R..........L.......LGTAQSVGC.VDG.H.HDII..IN.G.VECP
Retrocopy
IEIVPSASALFIKALTKLPIGRKKQKN--IKHSGNITFYKI--VSRCRTNLLPENSLEPLPSDTLGTAQSVGCSVDGCHAHDIIYNINGGMVECP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide