RetrogeneDB ID:
retro_mputfur_1228
Organism:
Location:
GL897047.1:5604592-5605010 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.79 %
Coverage:
74.87 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
PEBP1
Parental gene aliases:
No gene alias available
Parental gene description:
phosphatidylethanolamine binding protein 1 [Source:HGNC Symbol;Acc:8630]

Genomic region (view in browser)





>retro_mputfur_1228
TATGCTGGGGCGGGGATCAGTGAGCTGGGCAGAGTGCTGATGCCCACCCAGGTTAAGAGC
TGGCCCACCGCTGTTGCGAGGGTTGGCCTTGATGCAGGTACACACTACACCTTGGTCATG
ACAGATCCATATGCTCCCTGCAGGAAGGACCCCAAATACAGGGAGTGGCACCATTTTCTG
GTGGTCAGTATGAAGGGCGGTGCCATCAGCAGTGACACAACTCTCTCCAGTTACATTGGC
TCTGAGTCTCTCAAGGGCACAGGCCTTCAGCATTCCGTCTGGTTGGTTTACGAGCAGGAT
GGGCCACTGACATTTGACAAGTCCGTTCTCAGCAACTGATCAGAGACTGCCATGGCAAAT
TCAAAGTGGGGTCTTTCACAAAAAGTTCCAGCTCAGGTCCCCAGTGGCTGACATGTGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YTGTEIDELGKVLTPTQVKNRPTSIAWDGLDSGKLYTLVMTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQK
Y.G..I.ELG.VL.PTQVK..PT..A..GLD.G..YTLVMTDP.AP.RKDPKYREWHHFLVV.MKG..ISS.T.LS.Y.GS...KGTGL...VWLVYEQ.
Retrocopy
YAGAGISELGRVLMPTQVKSWPTAVARVGLDAGTHYTLVMTDPYAPCRKDPKYREWHHFLVVSMKGGAISSDTTLSSYIGSESLKGTGLQHSVWLVYEQD


Parental protein
GPLKCDEPILSNRS-GDHRGKFKVAS-FRKKYELGPPVAGTC
GPL..D...LSN.S..D..GKFKV.S.F.KK..L..PVA..C
Retrocopy
GPLTFDKSVLSN*S/RDCHGKFKVGS/FHKKFQLRSPVADMC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide