RetrogeneDB ID:
retro_mputfur_1229
Organism:
Location:
GL897047.1:2046866-2047864 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.81 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1229
ATGGTGAAGGTTGGAGTGAATGGATTTGGCTGTATTGGGTGCCTGGTCACCAGGGCTGCT
TTTAACTCTGGTAAAGTAGATATTGTCGCCATCAATGACCTTTTCATTGATCTCAACTAC
ATGGTCTACATGTTCCAGTATGATCCTACCCACAGTAAATTCCACGGCACAGTCAAGGCT
GAGAATGGGAAGCTTGTCATCAATGGGAAGTCCATCTCCATCTTCCAGGAGCGAGATCCC
GCCAACATCAAATGGGGCGATGCTGGTGCTGAGTATGTTGTGGAGTCCACTGGGGTCTTC
ACCACCATGGAGAAGGCTGGGGCTCACTTGAAGGGCGGGACCAAGAGGGTCATCATCTCT
GCTCCTTCTGCTGATGCCCCCACGTTCTGATGGGTGTGAACCATGAGAAGTATGACAACT
CCTTCAAGATTGTCAGCAAGGCCTCCTGTACCACCAACTGCTTGGCTCCTCTGGCCAAGG
TCATCCATGACAACTTTGGCATTGTGGAGGGACTCATGACCACTGTCCATGCCATCACTG
CCACCCAGAAGACTGTGGACGGCCCCTCTGGGAAGCTGTGGCATGACAGCCGAGGGGCTG
CCCAGAACATCATCCCTGCTTCCACTGGTGCGGCCAAGGCTGTAGGCAAGGTCATCCCTG
AGCTGCATGGGAAGCTTACTGGCATAGCCTTCTGTGTCCCCACCCCCAACGTGTCTGTTG
TGGATCTGACCTGCGGCCTGGAGAAAGCTGCCAAATATAATGACATCAAGAAGGTGGTGA
AGCAGGCATCAGAGGGCCCCCTTAAGGGCATCCTGGGGTATACTGAGGGCCAGGTTGTCT
CCTGTGACTTCAACAGTGACACCTACTCCTCTACCTTCGATGCTGGGGTTGACATTGCTC
TCAATGACCACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATTTGGCTACAGCAACC
AGGTGGTGGACCTTATGGTCCACATGGCCTCCAAGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVF
MVKVGVNGFG.IG.LVTRAAFNSGKVDIVAIND.FIDLNYMVYMFQYD.TH.KF.GTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVF
Retrocopy
MVKVGVNGFGCIGCLVTRAAFNSGKVDIVAINDLFIDLNYMVYMFQYDPTHSKFHGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVF


Parental protein
TTMEKAGAHLKGGAKRVIISAPSADAPMF-VMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRG
TTMEKAGAHLKGG.KRVIISAPSADAP.F..MGVNHEKYDNS.KIVS.ASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLW.D.RG
Retrocopy
TTMEKAGAHLKGGTKRVIISAPSADAPTF/LMGVNHEKYDNSFKIVSKASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWHDSRG


Parental protein
AAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGI
AAQNIIPASTGAAKAVGKVIPEL.GKLTG.AF.VPTPNVSVVDLTC.LEKAAKY.DIKKVVKQASEGPLKGILGYTE.QVVSCDFNSDT.SSTFDAG..I
Retrocopy
AAQNIIPASTGAAKAVGKVIPELHGKLTGIAFCVPTPNVSVVDLTCGLEKAAKYNDIKKVVKQASEGPLKGILGYTEGQVVSCDFNSDTYSSTFDAGVDI


Parental protein
ALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
ALNDHFVKLISWYDNEFGYSN.VVDLMVHMASKE
Retrocopy
ALNDHFVKLISWYDNEFGYSNQVVDLMVHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide