RetrogeneDB ID:
retro_mputfur_1233
Organism:
Location:
GL897049.1:3302301-3302650 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.21 %
Coverage:
74.21 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPC
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]

Genomic region (view in browser)





>retro_mputfur_1233
GTGGAAGAGCAGGCTCAGAGAGGGATGGACAAAACAACCGCTGCATTTCAACAAGAAGAG
GTACCTCCTACTCCATTCTCTGCTCCTCTTCCTGCAGGGCAATGATCCCACCCCACCCCC
CCAGTCTCCCGGCTCCTCCTCGCCCTGGCATGAGGCCAGAGCCCCATAGGGGGGGTCCTC
CCATGATGCCAGTGATGGACACTCCTGGATGATCCCAGTGGCACCTGCTTCTGGAATGAG
ACCACCTATGGGAGGCCACATGCCAATGATGCCTGGACCCCCAAAGATGAGACCGCCTTC
CCATCCTGTGATGGTGTCCACTCAGCCAGGAATGACTTTACCAGACAGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAG-AMIPP-PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPG-MMPVGPAPGMRPPMGGHMPMMPGPPM
.EEQAQ...DKTTAAFQQ...PPTPFSAP.PAG.AMIPP.PPSLP.PPRPGM.P.PH.GGPPMMP.M....PG.M.PV.PA.GMRPPMGGHMPMMPGPP.
Retrocopy
VEEQAQRGMDKTTAAFQQEEVPPTPFSAPLPAG/AMIPPHPPSLPAPPRPGMRPEPHRGGPPMMPVMDT--PG/MIPVAPASGMRPPMGGHMPMMPGPPK


Parental protein
MRPPARPMMVPTRPGMTRPDR
MRPP..P.MV.T.PGMT.PDR
Retrocopy
MRPPSHPVMVSTQPGMTLPDR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide