RetrogeneDB ID:
retro_mputfur_1241
Organism:
Location:
GL897051.1:2105260-2105684 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.01 %
Coverage:
65.89 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
TMED2
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane emp24 domain trafficking protein 2 [Source:HGNC Symbol;Acc:16996]

Genomic region (view in browser)





>retro_mputfur_1241
GATATCGATGTGGGGAAGACAGGGCCTGATAATAGAAGAGTTTATAAAGGAGACCGAGAG
TCCAATGGGAAATACACATTTGCTGCTGGCATGGATGGAACACATTAGGTTTTGTTTTAG
CAACAGGATGTCTACCATGACTCCAAAGACAGTGATGTTTTCCATTGATATTGGGGAGGA
CCACAAAGGACAAGACATTGAAATAGAAGCTCACCAGGACAAGCTGGAAGAAATGATTAA
TGAGCAGGCAGGGATGATGGCAGCTGTCGAGCATGAACAGGCGTCCATGGAAGATCAGGA
GGGGGTGCGCAGAGCGATCAACAATGACCCAAGCAGCGGAGTGGTCCCTGGGTCCTTCAC
TGAAGCTTTTGTTCTAGTTGCTGTGAGACTGGGACTGATCTACTACCTGAAGAAACTTTT
AAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTY-RFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVR
DIDV..TGPDN...YKGDRES.GKYTFAA.MDGT..RFCFSNRMSTMTPK.VMF.IDIGE..KGQD.E.EAHQ.KLEEMINE.A..M.AV.HEQ..ME..
Retrocopy
DIDVGKTGPDNRRVYKGDRESNGKYTFAAGMDGTH\RFCFSNRMSTMTPKTVMFSIDIGEDHKGQDIEIEAHQDKLEEMINEQAGMMAAVEHEQASMEDQ


Parental protein
ERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE
E...RAIN....S.VV..SF.EA.VLVA..LG.IYYLK....
Retrocopy
EGVRRAINNDPSSGVVPGSFTEAFVLVAVRLGLIYYLKKLLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide