RetrogeneDB ID:
retro_mputfur_1243
Organism:
Location:
GL897052.1:2953680-2954258 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.57 %
Coverage:
73.28 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
PSMA1
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530]

Genomic region (view in browser)





>retro_mputfur_1243
ATCTCAATCGTGGTACTTACTGCTGATGCCAGACTGTTAGGTAATTTTATGCGCCAGGAG
TGTTTGGATTCCAGATTTGTATTTGACAGACCTCTTCCTGTAACTCATCTTGTATCTCTA
ATTGGAAGCGAGACCCAGATACCAACCCAACGATGGGGCTGGAGACCCTATGGTGTTGGA
CTGCTTATTGCTGTTTATGATGATATGGAACCTCACATTTTCCAAACCTTTCCTTTTGCC
AACTATTTTGACTGTAGAGCCATGTCCATTGGAGCCCATTCTTAATCAGCTCATACTTAA
CTTGGGGAGACATATGTCTGGATTTATGGAGTGCAATTTAAATGAACTGGTTAAACATGG
TCTACCTGCCTTACGAGAGACACTTCCAGCAGAACAGAACCTAACTACGAAGAATGTTTC
CATGGGAATTGTTGGCAAAGACTTGGAGTTTACAATTTATGATGATGATGATGTATCTGC
ATTCCTGGGAGGTCTTGAAGAAAGACCGCGGAGAAAGGCACAGCCTGGTCAACCTGCTGA
TGTACCTGCGGAAAAGGCTTGATGAACCGAGGGAACAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSART-
ISI..LTADARLL.NFMRQECLDSRFVFDRPLPV..LVSLIGS.TQIPTQR.G.RPYGVGLLIA.YDDM.PHIFQT.P.ANYFDCRAMSIGA.S.SA.T.
Retrocopy
ISIVVLTADARLLGNFMRQECLDSRFVFDRPLPVTHLVSLIGSETQIPTQRWGWRPYGVGLLIAVYDDMEPHIFQTFPFANYFDCRAMSIGAHS*SAHT\


Parental protein
YLERHMSGFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPAQPADEPAEKA-DEPMEH
.L.RHMSGFMECNLNELVKHGL.ALRETLPAEQ.LTTKNVS.GIVGKDLEFTIYDDDDVS.FL.GLEERP.RKAQP.QPAD.PAEKA.DEP.EH
Retrocopy
NLGRHMSGFMECNLNELVKHGLPALRETLPAEQNLTTKNVSMGIVGKDLEFTIYDDDDVSAFLGGLEERPRRKAQPGQPADVPAEKA\DEPREH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide