RetrogeneDB ID:
retro_mputfur_1244
Organism:
Location:
GL897052.1:3840088-3840624 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.03 %
Coverage:
54.13 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
MTFR1
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial fission regulator 1 [Source:HGNC Symbol;Acc:29510]

Genomic region (view in browser)





>retro_mputfur_1244
AGCATGCGATCAGTACTGATGCTTTGGTTTGGGAGGCCATATGGTTCATCTCGATGTATC
CTAAGTAAAACTGGTACTAATTTATCTCGGATGCGGTGTCCAAGAGTTCAGTTTCAGCTT
ACCGGCCCTACAACAGAATGGAGCCACAATCGTCCAGAAAAAGATGTAGTGGTATCTTTT
GCTGATGTTGGACAGGTAGCCAAAGAAGAAGGAAAGTGTTTAACAAGAGGGCCAACAGGG
TCAGACCAAGGCAACCCCTTCAGGATGACCTTCCTTTCTTTGAGAAGCCTCCAAGCAGGT
GATTTTCCTTATCAAACCTGTCTCTAGAAGACCCTCATCTGAAGATAGCCCTAGCAAATG
AGGAAGCATTGCAGAAAATTTGCCCTTGAGAAAGAACTTGTTGCTCTCAGAACAGCTCAA
ATTGCCAAAACTGACCCTGCAGGAACAGCAAAATCTCATCGCAATTGATTTAGATTCTGT
CACATCTGTTAACCGCAGCACCACCCTTGGTCCCACCACTTTCCCCATCCCCACCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SMQSVL--WSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPNHLGEDAVVSFADVGWVAKEEGECSTRQRT-EVRSRQPLQDDLPFFEKPPS
SM.SVL..W.G.PYGSSR.I..K.GTNLS...CPRVQFQLT.PTTEWS.N....D.VVSFADVG.VAKEEG.C.TR..T..VR.RQPLQDDLPFFEKPPS
Retrocopy
SMRSVLMLWFGRPYGSSRCILSKTGTNLSRMRCPRVQFQLTGPTTEWSHNRPEKDVVVSFADVGQVAKEEGKCLTRGPT/RVRPRQPLQDDLPFFEKPPS


Parental protein
RQFSLPNLSPEDPQQKTALANEEALQKICALENE-LAALRAQIA-KIVTLQEQQNLITGDLEPATSV-TTPPSSIPPPPPPPP
R.FSL.NLS.EDP..K.ALANEEALQKIC..E....A...AQIA.K......Q.NLI..DL...TSV.T..P...PP..P.PP
Retrocopy
R*FSLSNLSLEDPHLKIALANEEALQKICP*ERT\VALRTAQIA\KLTLQEQQ-NLIAIDLDSVTSV\TAAPPLVPPLSPSPP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide