RetrogeneDB ID:
retro_mputfur_1247
Organism:
Location:
GL897054.1:503041-503327 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.12 %
Coverage:
84.21 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
PPDPF
Parental gene aliases:
No gene alias available
Parental gene description:
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]

Genomic region (view in browser)





>retro_mputfur_1247
ATGGCAGCCATGCCCTCCAATGGCTTGCTTATGACAACCCACACTATTACCCACGCCACC
TAGGTTCCACTTCCAGTAACAGCTTCTGCTGAAGTGCAGAGTATCTTGGGGTAACCATCC
CTAACCACTCCAGTCTCCCCAGAGCCAACCCGAGTCACTGGTGGGGAAACTTCTCTTTTG
GGAAATCCATTCTACCACCCCTGGCTATAGTGCTGGAGTCCTCAGATTGCTAGGAATCTT
CCAGGCCTCCAGCAGCACAATCATTTGTGACTTAGCTCTGGAAGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIPSSGSLVATHD-YYRRRLGSTSSSSSCGSAECAGEAIPHPPGLPKADPGHWWASFFFGKSTVPFMATVLESPERSEPP-QASSGTITSDPAPEA
MAA.PS.G.L..TH..YY.R.LGSTSS.S.C.SAE..G..IP....LP.A.P.HWW..F.FGKS..P..A.VLES....E...QASS.TI..D.A.EA
Retrocopy
MAAMPSNGLLMTTHT/YYPRHLGSTSSNSFC*SAEYLGVTIPNHSSLPRANPSHWWGNFSFGKSILPPLAIVLESSDC*ESS/QASSSTIICDLALEA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide