RetrogeneDB ID:
retro_mputfur_1255
Organism:
Location:
GL897056.1:1808656-1809557 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.89 %
Coverage:
68.47 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1255
AGGAAGATCTTGCCCCTCCAGGCCAGCCAGTGCAGAAACCAGATCCGCGCCAAATTCGGA
AGGTCATCAGCGACAAGCATGGCATCGACATTGCCAGCATTTACCACAGTGAGAGTGATC
CGAAGCTGGAGCAGATCGAGTACTCCAAGAACACCGCCGGCGGCAACTGCGTGCCCTGCA
CTGTGCTTGTGGACCTGGAGCTGGGCACTATGGTCTCCCTGTGCTTGGGACCCTTTGGGC
AAATCTTCAGACAACATGGCTTCCGGTCAGAGTTACACAGAACAGTGGGCCAAGGGGCAC
TACACAGAGGGTGAAGAGCTGATCAACTCTGGGCTGGAAGTTGTGAGGAAAAAATGTTAA
ATCTGTGACTGCCTGCAGGGTTTCCAGCTGACCCACTCCCCAGGTAGGGTGACTGAGCCT
GGGATGGGTACCCTTTTCATCAGCAATATTGGGGAGGTGTGCCCAGACGGGATCATGAAC
ACATTCAGTGTGGCGCCCTCAAGCAACTGGTGGGACAGGGTGGTGGAGCCCTATGATGTC
ATGCTCTCAGCCCACTGGCTCATAGATAACCCAGACTGAAAGCTATTGGATTGATAACAA
GGCCCCCTATGACATCTGCTTTGGAACTTTGAAACTGACCACACCCACCCATGGGGACGA
CAACCACCTGGTGTCAGCCACCATGAGTGGGGTCACCAGATGCCTGCCTTTTCCTGGACA
GCTCAATGCTGACCCATACAAGCTGGCTATCAATAGGGTCCTTTGCCCCTGACTGCAATT
CTGCATGCCCGGCTTCACCCCACTGACCAGCTGGAGCAGCCAACAGTACATGGCGCTGAC
AGTGGCCAAGCTCACCCAGCACGTGTTTGATGCCAAGAACATTACAGCCACTACCTGACC
G


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
REIVHLQAGQCGNQIGAKFW-EVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSG-PFGQIFRPDNFVFGQSGAGN
R.I..LQA.QC.NQI.AKF...VISD.HGID....YH..SD..LE.I..Y.....GGN.VP..VLVDLE.GTM.S...G.P.G.....DN...GQS....
Retrocopy
RKILPLQASQCRNQIRAKFG/KVISDKHGIDIASIYHSESDPKLEQIE-YSKNTAGGNCVPCTVLVDLELGTMVSLCLG\PLGK--SSDNMASGQSYT-E


Parental protein
NWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTD-E
.WAKGHYTEG.EL....L.VVRK....CDCLQGFQLTHS.G..T..GMGTL.IS.I.E..PD.IMNTFSV.PS....D.VVEPY...LS.H.L..N.D.E
Retrocopy
QWAKGHYTEGEELINSGLEVVRKKC*ICDCLQGFQLTHSPGRVTEPGMGTLFISNIGEVCPDGIMNTFSVAPSSNWWDRVVEPYDVMLSAHWLIDNPD\E


Parental protein
TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN
.Y.IDN.A.YDICF.TLKLTTPT.GD.NHLVSATMSGVT.CL.FPGQLNAD..KLA.N.V..P.L.F.MPGF.PLTS..SQQY.ALTV..LTQ..FD.KN
Retrocopy
SYWIDNKAPYDICFGTLKLTTPTHGDDNHLVSATMSGVTRCLPFPGQLNADPYKLAINRVLCP*LQFCMPGFTPLTSWSSQQYMALTVAKLTQHVFDAKN


Parental protein
MMAACDP
..A...P
Retrocopy
ITATT*P


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide