RetrogeneDB ID:
retro_mputfur_1256
Organism:
Location:
GL897057.1:4198041-4199037 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.69 %
Coverage:
86.23 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
LDHA
Parental gene aliases:
No gene alias available
Parental gene description:
L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:C6L2F2]

Genomic region (view in browser)





>retro_mputfur_1256
AAGATGGCAACCGTCAGGTGCGAGCTTCTCAAGAACTTCGCTTCCGAGGAGGCCGTGCCT
CACAACAAGGTCTCCATCATCGGAACCGGATCGGTTGGCATGGCCTGTGCTATCAGCATC
CTGTTAAGGGGCTTGACCGATGAACTTGCCCTTGTGGATGTTCATGAAGACAAACTGAAG
GGGGAGACGATGGATCTTCAGCATGGCAGCCCCTTCGTGAAAATGCCAACTATTGTGTCC
AGCACAGATTACCTCGTCACTGCAAACTCCAGCCTCGTGATCATCACCGCAGGGGCGCGC
CAGGAAAAAGGGGAAACACGGCTGAATTTAGTCCATCGAAATGTGGACATCTTTAAATTA
ATGATTTCCAGTATTACCCAGTATAGCCCTCGCTGCAAAATGATCGTTGTTTCCAACCCA
GTGGATATACTAACTTACGTGGCCTGGAAGTTGAGCGAATTTCCCCCAAACCGTGTTACT
GGAAGTGGTTGTAGTCTGGACACGGCCCGTTTCCGTTTCTTGATTGGGCAGAAGCTCGGT
ATCCACGCTGAAAGCTGTCATGGGTGGGTCCTGGGAGAGCATGGAGACTCGAGTGTGCCT
GTGTGGAGTGGAGTGAACGTCGCTGGTGTCCCTCTGAAGAACCTGAACTCAGCCATAGGA
ACTGATCAAGATCCTGAGCAGTGGAAGAATGTCCACAAAGATGTGGTCGCTAGTGCCTAT
GAGATTATTAGAATGAAAGATTATACTTCTTGGGCCATTGGCCTATCTGTAGCTGATTTA
ACAGAAAGTATTTTGAAGAATCTTAGAAGAGTGCATCCAGTTTCCACATTAGTTAAGGGT
CTCTATGGAATAAATGAAGAAGTATTCCTCAGTGTTCCGTGTATCTTGGGAGAGAATGGT
ATTACAGACCTTATAAAGATAAAGCTGACCACAGAAGAAGAGGCTTGTCTGAAGAAGAGT
GCAGAAACGCTTTGGGAAATTCAGAAGGAGCTCAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMATLKDQLIQNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGAR
KMAT....L..N...EE.VP.NK....G.G.VGMACAISIL...L.DELALVDV.EDKLKGE.MDLQHGS.F...P.IVS..DY.VTANS.LVIITAGAR
Retrocopy
KMATVRCELLKNFASEEAVPHNKVSIIGTGSVGMACAISILLRGLTDELALVDVHEDKLKGETMDLQHGSPFVKMPTIVSSTDYLVTANSSLVIITAGAR


Parental protein
QQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP
Q..GE.RLNLV.RNV.IFK..I.....YSP.CK..VVSNPVDILTYVAWK.S.FP.NRV.GSGC.LD.ARFR.L.G..LG.H..SCHGW.LGEHGDSSVP
Retrocopy
QEKGETRLNLVHRNVDIFKLMISSITQYSPRCKMIVVSNPVDILTYVAWKLSEFPPNRVTGSGCSLDTARFRFLIGQKLGIHAESCHGWVLGEHGDSSVP


Parental protein
VWSGVNIAGVSLKNLHPDLGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKDDVFLSVPCILGQNG
VWSGVN.AGV.LKNL....GTD.D.EQWK.VHK.VV.SAYE.I..K.YTSWAIGLSVADL.ESI.KNLRRVHP.ST..KGLYGI...VFLSVPCILG.NG
Retrocopy
VWSGVNVAGVPLKNLNSAIGTDQDPEQWKNVHKDVVASAYEIIRMKDYTSWAIGLSVADLTESILKNLRRVHPVSTLVKGLYGINEEVFLSVPCILGENG


Parental protein
ISDVVKVTLTTEEEARLKKSADTLWGIQKELQ
I.D..K..LTTEEEA.LKKSA.TLW.IQKEL.
Retrocopy
ITDLIKIKLTTEEEACLKKSAETLWEIQKELK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide