RetrogeneDB ID:
retro_mputfur_1260
Organism:
Location:
GL897058.1:3308903-3309255 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.83 %
Coverage:
72.33 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
SNRPC
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]

Genomic region (view in browser)





>retro_mputfur_1260
CAGGCTTAGAGTCTGACCAACAAAACCACCATTGCATTTCAACAAGGAAAGTTACCTCCT
ATTCCATACACTTCTTCTCCTCATGCAGGGACAATGATCTCCCCTCCCGCATTCCCTTCT
CTTAGGGTCCTCCTTGCCCTGAATGATGCCAGTACCCCCTACTGGAGGCCCTGCCATGAT
GCCATGGATGGTTCTTCCTCCTCCTGGGAAGATGTCGGTGATGGGACCTGCTCCTAGAAT
GAGGTCACCTATGTGAGGCCACCCGCCAATGATGCCTGGACCCCCCATGATGAGACCTCC
CGCCTGCCCCGTGATGGCACTTGGCCAGGAGTGACTCAACCAGACAGATAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP--PSLP-GPPRPG-MMPAPHMGGPPMMPMMGPPPPGMMPV-GPAPGMRPPMGGHMPMMPGPPMM
QA.SL..KTT.AFQQGK.PP.P....P.AG.MI.PP..PSL..GPP.P..MMP.P..GGP.MMP.M..PPPG.M.V.GPAP.MR.PM.GH.PMMPGPPMM
Retrocopy
QA*SLTNKTTIAFQQGKLPPIPYTSSPHAGTMISPPAFPSLR/GPPCPE/MMPVPPTGGPAMMPWMVLPPPGKMSVMGPAPRMRSPM*GHPPMMPGPPMM


Parental protein
RPPARPMMVPTRPGMTRPDR
RPPA.P.M..........D.
Retrocopy
RPPACPVMALGQE*LNQTDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide