RetrogeneDB ID:
retro_mputfur_1264
Organism:
Location:
GL897061.1:1698311-1698840 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.67 %
Coverage:
51.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
ABHD5
Parental gene aliases:
No gene alias available
Parental gene description:
abhydrolase domain containing 5 [Source:HGNC Symbol;Acc:21396]

Genomic region (view in browser)





>retro_mputfur_1264
CTGACTTTTGGAGATCTTTGCACTGATAAACCCATCTATGCTTTTGACCTGTCGGGCTTT
GGACAAAGTAGTAGGCTAGGTTTGACAATGATGCGGAAGTGGAGAATCAATTTGTGGAAT
CCACTGAAGAATGGAGATGTGCCCTAGGATTGGACAAAGTGATCTTGCTTGGGCACAACT
TGGGTGGGTTCTTGGCTGCTGCTTACTCACTGAAGTACCTGTCAAGGGTTAATCATCTCA
TTTTAGTGGAGCCTTGGGGTTTTCCTGAGCCACTAGAACTTGCTGATCAAGACAGACCAA
TCCCAGTGTGGATCAGAGCCTTGGGAGAAGCACTGACTCCCTTTAATCCTTTAGCTGGCC
TCAGAATTACAGGACCCTTTGGCTTAAGTCTAGTGCAGTGTTTAAGGCCTGATTTCAAAT
GGAAGTATTCTTCAATGTTTGAAGATGACACCATGACAGAATACATCTACCACGTAATGT
GCAGACTCCAAGTGGTGAGACAGCATTCAAAAATATGACTCTTCCTTAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LNFGDLCTGRPVYAFDLLGFGRSSR-PRFDSDAEEVENQFVESIEEWRCALGLDKMILLGHNLGGFLAAAYSLKYPSRVNHLILVEPWGFPERPDLADQD
L.FGDLCT..P.YAFDL.GFG.SSR..RFD.DAE.VENQFVES.EEWRCALGLDK.ILLGHNLGGFLAAAYSLKY.SRVNHLILVEPWGFPE...LADQD
Retrocopy
LTFGDLCTDKPIYAFDLSGFGQSSR/ARFDNDAE-VENQFVESTEEWRCALGLDKVILLGHNLGGFLAAAYSLKYLSRVNHLILVEPWGFPEPLELADQD


Parental protein
RPIPVWIRALGAALTPFNPLAGLRIAGPFGLSLVQRLRPDFKRKYSSMFEDDTVTEYIYHC-NVQTPSGETAFKNMTIPY
RPIPVWIRALG.ALTPFNPLAGLRI.GPFGLSLVQ.LRPDFK.KYSSMFEDDT.TEYIYH..NVQTPSGETAFKNMT.PY
Retrocopy
RPIPVWIRALGEALTPFNPLAGLRITGPFGLSLVQCLRPDFKWKYSSMFEDDTMTEYIYHV/NVQTPSGETAFKNMTLPY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide