RetrogeneDB ID:
retro_mputfur_1267
Organism:
Location:
GL897063.1:2912841-2913229 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.59 %
Coverage:
64.56 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_1267
GAGAAGGTAGTTCATAGACTGGCTACAGCAGATGATAAAAAATTTCAGTTCTCCTTAAAG
AGGTTGGGGCAAACAATATTTCTGGTATTGAAAAGGTGAATATGTTCACAACCCAAAGAC
AGTGATCCACTTTAACAGCCCTGAAGTTCAGGCATCCTGGCAGCAAACACTTAGAGGCCA
TGCTAAGACAAAGCAGCTGACAGAAATGCTAACCAGTATCTTAAACCAACTTGGTGCAGA
CAGTCTAACTCCTTGAAGATGACTGGCTGAAGCTCTACCCACACAATCTGTGGATGGAAA
AGTATCACTTATTACCAGGAAGGATGATGATGATGAAATTCCAGACCTTACAGAGATTTT
TGATGAAGTTTCCAAGAATAAAGCAAAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKVVHRTATADDKKLQFSLKKLG-VNNISGIEEVNMFTNQG-TVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPK
.KVVHR.ATADDKK.QFSLK.LG..NNISGIE.VNMFT.Q..TVIHFN.P.VQ...A....T..GHA.TKQLTEML.SILNQLGADSLT..R.LAEALP.
Retrocopy
EKVVHRLATADDKKFQFSLKRLG/ANNISGIEKVNMFTTQR/TVIHFNSPEVQ---ASWQQTLRGHAKTKQLTEMLTSILNQLGADSLTP*R*LAEALPT


Parental protein
QSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
QSVDGK..L.T..DDDDE.PDL.E.FDE.SKN.AN
Retrocopy
QSVDGKVSLITRKDDDDEIPDLTEIFDEVSKNKAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide