RetrogeneDB ID:
retro_mputfur_1279
Organism:
Location:
GL897066.1:3649665-3650131 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.15 %
Coverage:
53.82 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1279
AGTCAGCATGTGAGAAAACTGTGAGCTAGTCTCACTCCTGGCACCATCTTGATCATCCTC
ACTGGGAGCCAAAGAGGCAAGAGGGTGCTTTTCCTGAAGCAGCTGAACAGTGGCTTGCTA
CTTGCAACTGGATCTCTGGCCCTCAATTGAGTTCCTCTGTGTAGAACCCACCAGAAATCT
GTGATTGCCACTTGCACCAAAATCAATACTGGCAATATTAAAATCTCTAAACATCTCACC
GATACTTACTTCAAGAAGAAGAAGCTGAGTACACCCAGATGCCAGGAGGGTGAGGTCTTT
GTCACAGGGAAAGAGAGAAAGGAGATTACGGAGCAGTGCAAAGTTAATCAGAAAGCTGTG
GACTTGAAATTCATCTTACAATCCAAGTTGTTCCTCAGCTTCAGTGCTACCCCCCACTCT
GTGATTTCTCTCACAAATGGAGTTTATCCTTCACAAGTTGGTGTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIF
SQHVRKL.AS.TPGTILIILTG..RGKRV.FLKQL.SGLLL.TG.L.LN.VPL.RTHQK.VIAT.TKI...N.KI.KHLTD.YFKKKKL..PR.QEGE.F
Retrocopy
SQHVRKL*ASLTPGTILIILTGSQRGKRVLFLKQLNSGLLLATGSLALN*VPLCRTHQKSVIATCTKINTGNIKISKHLTDTYFKKKKLSTPRCQEGEVF


Parental protein
DTEKEKYEITEQRKVDQKAVDSQILPK-IKAVPQLQGY-LRSVFSLTNGVYP-HKLVF
.T.KE..EITEQ.KV.QKAVD.......I..VPQLQ.Y...SV.SLTNGVYP.HKLVF
Retrocopy
VTGKERKEITEQCKVNQKAVDLKFILQ/IQVVPQLQCY\PHSVISLTNGVYP\HKLVF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide