RetrogeneDB ID:
retro_mputfur_1280
Organism:
Location:
GL897066.1:1579098-1579781 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.07 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPE
Parental gene aliases:
No gene alias available
Parental gene description:
ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293]

Genomic region (view in browser)





>retro_mputfur_1280
ATGGCGTCTGGCTGCAAGATTGGCCTGTCCATCCTTAACAGTGATTTGGCCAATTTAGGG
GCCGAGTGTTTCCGGATGCTGGACTCTGGGGCCGATTATTTGCACCTGGTTGTAATGGAC
GGGCATTTTGTTCCCAACATCACCTTTGGACACCCTGTGGTAGAAAGCCTCCGAAAGCAG
CTAGGCCAGGATCTTTTCTTTGACATGCACATGATGGTGTCCAGGCCGGAACAGTGGGTC
AAACCAATGGCCATGGCAGGAGCCAATCAATACACCTTTCATCTTGAGGCTACTGAGAAC
CAGGGGTGTTGATTAAAGACATTCGGGAGAATGGGATGAAGGTCGGCCTTGCCATCAAAC
CGGGAACCACAGTTGAGTATTTGGCACCATGGGCTAATCAGATAGATATGGCCTTGGTTA
TGACAGTGGAACCTGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTTC
ATTGGTTGAGGACCCAGTTCCCATCCTTGGACATAGAAGTCGATGGTGGAGTAGGCCCTG
ACACTATCCATAAATGTGCAGAGGCAGGAGCTAACATGATTGTGTCTGGCAGTGCCATTA
TGAAGAATGATGACCCCAGATCTGTGATCAACCTGTTAAGAAATGTTTGCTCAGAAGCTG
CTCAGAAACGTTCTCTTGATCGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATEN
MASGCKIG.SILNSDLANLGAEC.RMLDSGADYLHL.VMDGHFVPNITFGHPVVESLRKQLGQD.FFDMHMMVSRPEQWVKPMA.AGANQYTFHLEATEN
Retrocopy
MASGCKIGLSILNSDLANLGAECFRMLDSGADYLHLVVMDGHFVPNITFGHPVVESLRKQLGQDLFFDMHMMVSRPEQWVKPMAMAGANQYTFHLEATEN


Parental protein
-PGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSA
.PG.LIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSA
Retrocopy
/PGVLIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSA


Parental protein
IMRSDDPRSVINLLRNVCSEAAQKRSLDR
IM..DDPRSVINLLRNVCSEAAQKRSLDR
Retrocopy
IMKNDDPRSVINLLRNVCSEAAQKRSLDR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide