RetrogeneDB ID:
retro_mputfur_1284
Organism:
Location:
GL897067.1:3384675-3385311 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.64 %
Coverage:
52.61 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL3
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L3 [Source:HGNC Symbol;Acc:10332]

Genomic region (view in browser)





>retro_mputfur_1284
AAAAAGCTGGACTGGGCCCGGGAGAGGCTGGAGCAGCAGGTGCCTGTGAACCAAGTGTTT
GGGCAGGACGAGGTGATCGATGTCATTGGTGTCACCAAGGGCAAAGGCTACAAAGGTGTC
ACCAGCCGCTGGCACACCAAGAAGCTACCCCGCAAAACCCACCGGGGCCTGCGCAAGGTT
GCGTGTATTGGGGCTTGGCATCCTGCCCGCGTGGCCTTCTCTGTGGCTCGTGCTGGGCAG
AAAGGCTACCATCACTGCACGGAGATCAACAAGAAGATCTACAAGATTGGCCAGGGCTAC
CTCATCAAGGACGGCAAGCTGATTAAGAACAATGCCTCCACCGACTACGATCTGTCTGAC
AAGAGCATCAACCCCCTGGGTGGTTTTGTCCACTATGGTGAAGTGACCAATGACTTTGTC
ATGCTGAAGGGCTGTGTGGTGGGAACCAAGAAGTGAGTGCTTACGCTCCGCAAGTCCTTG
CTGGTGCAGACCAAACGGCAGGCCCTGGAGAAGATCGACCTTAAGTTCATCGACACCACC
TCCAAGTTTGGCCATGGCCGATTCCAGACGGTGGAGGAGAAGAAAGCGTTCATGGGACCA
CTTAAGAAAGACCGAATTGCAAAGGAAGAAGGAGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGY
.KLDWARERLEQQVPVNQVFGQDE.IDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHH.TEINKKIYKIGQGY
Retrocopy
KKLDWARERLEQQVPVNQVFGQDEVIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHCTEINKKIYKIGQGY


Parental protein
LIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGP
LIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK.VLTLRKSLLVQTKR.ALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGP
Retrocopy
LIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK*VLTLRKSLLVQTKRQALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGP


Parental protein
LKKDRIAKEEGA
LKKDRIAKEEGA
Retrocopy
LKKDRIAKEEGA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide