RetrogeneDB ID:
retro_mputfur_1287
Organism:
Location:
GL897069.1:2234266-2234544 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.79 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
HIGD1A
Parental gene aliases:
No gene alias available
Parental gene description:
HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527]

Genomic region (view in browser)





>retro_mputfur_1287
ATGTCAATAGGCATGGATGTTTCTCTTTCTTCGTCCAGGAAAGGTCAGGGATCTAAACTT
ATTTGAAAAGCTAAAGACGCACTGTTTGTTCCCATTGGAACAGCAGGGTTTGCAGCAATC
GTTGCATATGGATTATATAAACTGAAGAGAAGGGGAATACTAAAATGTCTGTTCACCTAA
TCCACATGCATGTGGCAGCCCAAAGCTTTGTTATGGGAGCAGTGACCCTTGTTATGGGCT
GTTCCATGTATAAGGAATTCTGGACAAAGCCTAAACCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSTGTDVSLSSYDEDQGSKLIRKAKEAPFVPIGMAGFAAIVAYGLYKLKSR-GNTKMSVHLIHMRVAAQGFVVGAMTLGMGYSMYKEFWAKPKP
MS.G.DVSLSS....QGSKLI.KAK.A.FVPIG.AGFAAIVAYGLYKLK.R.GNTKMSVHLIHM.VAAQ.FV.GA.TL.MG.SMYKEFW.KPKP
Retrocopy
MSIGMDVSLSSSRKGQGSKLI*KAKDALFVPIGTAGFAAIVAYGLYKLKRR/GNTKMSVHLIHMHVAAQSFVMGAVTLVMGCSMYKEFWTKPKP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide