RetrogeneDB ID:
retro_mputfur_1289
Organism:
Location:
GL897069.1:2232774-2233311 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
85.79 %
Coverage:
88.83 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_1289
GGAGACCCCCAAGCGCCAACCCTAGTCCCCCGCGCGTCCCATTTCCGCTCCAACAAGATG
AAAGAAACTATCATGAACCAGGAGAAACTCGCCAAACTGCAAGCACAAGTGCCCATTGGT
GGGAAAGGAACTGCTCGCCGAAAGAAGATGGTTCATAGAACAGCTACAGCAGATGATAAA
AAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAAACAATATCTCTGGTATTGAAGAAGTG
AATATGTTCACAAACCAAGGAACAGTGATCCACTTTAACAACCCCAGGGTTCAGGCATCG
CTGGCAGCGAACACTTTCACCATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAACG
CTACCCAGTATCTTAAACCAACTTGGTGCAGACAGTCTGACTAGTTGAAGACTGGCTGAA
GCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCACTTGCTACCGGAGAGGAGGAGGAT
GATGAAGTTCCAGGTCTTGTGGAGAATTTTGATGAAGCTTCCAAGAATGAAGCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GGEATPSLPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKV
G....P.L.P.....R.....MKETIMNQEKLAKLQAQV.IGGKGTARRKK..VHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNP.V
Retrocopy
GDPQAPTLVPRASHFRSNK--MKETIMNQEKLAKLQAQVPIGGKGTARRKK-MVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPRV


Parental protein
QASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
QASLAANTFTITGHAETKQLTE.LPSILNQLGADSLTS..RLAEALPKQSVDGKAPLATGE..DDEVP.LVENFDEASKNEAN
Retrocopy
QASLAANTFTITGHAETKQLTETLPSILNQLGADSLTS-*RLAEALPKQSVDGKAPLATGEEEDDEVPGLVENFDEASKNEAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide