RetrogeneDB ID:
retro_mputfur_1291
Organism:
Location:
GL897070.1:3559140-3559715 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.5 %
Coverage:
96.08 %
Frameshifts:
4
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1291
AGGTACATCCAGGAGCTATGGAGGAAGAAGCAGTCCAATGTAATGTGCTTTGTTCTCAAG
GTGCACGCTGCCCAGCTCTCTGGGCTCCACTGGCCCCCTGCCCAACCTGACCTAATAAAG
TACACAGACAAGGGTACAAGGCCAAGCAAGGTTATGTCATCTGTCAGATTCTTGTGTGTC
ACGGTAGCTGCAAACACCCAGCTCCTAAGGGTGTGACCTAGAGCAAGCCTGTCCATCATG
GTGCTAACAGCTCAAGTTTGCCCAAAGCCTATAGTCTGTCACAGAAAAGCAAGCTGGACA
CCATAGTAGGGCTCTAAGACTCTTGAAATCTTACTGGATCGGCAAAGATTCCATTTACAA
ATGTATCCAGGTTATATTCATCAATCCATTTCATAAAGCTATCAGAAGAAATTCTGACAC
CCAGGAGAGCACCAGACCAGTCCACAGCATAGGGAGATGTGAGGACTGACATATGCAGGC
CCTGAAAACATGGCCTTGGGAACAGTCCCAAGTTCCACCACATCACTAGTGGTTCTCACA
GTATGGCATGGAGAAGATACAATACTCTCCAGCTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KYIQELWRKKQSDVMRFLLRVRCWQYRQLSALH-RAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVN-QLKFARSLQSVA
.YIQELWRKKQS.VM.F.L.V......QLS.LH..AP.PT.P.K..R.GYKAKQGYVI..I.V..G..K.P.PKG.T..KPVHHG.N.QLKFA.SL.SV.
Retrocopy
RYIQELWRKKQSNVMCFVLKVHA---AQLSGLH/LAPCPT*PNKVHRQGYKAKQGYVICQILVCHGSCKHPAPKGVT*SKPVHHGAN/QLKFAQSL*SVT


Parental protein
EERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVH-KHREMRGLTSAGRKS-RGLGKGHKFHHTIGGSRRAAWRRRNTLQL
E..AG.H..ALR.L.SYW.G.DS.YK...VI.I.PFHKAIRRN.DTQ..T.PVH..HREM.GLT.AG.....GLG...KFHH...GS...AWRR.NTLQL
Retrocopy
EKQAGHHSRALRLLKSYWIGKDSIYKCIQVIFINPFHKAIRRNSDTQESTRPVH/QHREM*GLTYAGPEN/HGLGNSPKFHHITSGSHSMAWRRYNTLQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide