RetrogeneDB ID:
retro_mputfur_1295
Organism:
Location:
GL897071.1:3040310-3040856 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
96.15 %
Coverage:
75.52 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
PSMA5
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, alpha type, 5 [Source:HGNC Symbol;Acc:9534]

Genomic region (view in browser)





>retro_mputfur_1295
ATGTTCCTCGCCCGGTCTGAGTACGACAGGGGCGTGAATACTTTTTCTCCTGAAGGAAGA
TTATTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACAGCCATTGGGATC
CAGACATCAGAGGGTGTATGCCTAGCTGTGGAGAAGAGAATTACCTCCCCACTCATGGAG
CCAAGCAGCATTGAGAAAATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGG
CTAATTGCTGATGCTAAAACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACTATTGG
TTCACCTACAATGAGACAATGACTGTGGAGAGTGTGACTCAGGCTGTGTCTAATCTAGCT
CTTCAGTTTGGAGAAGAAGATGCAGATCCAGGTGTCATGTCTTGTCCCTTTGGAGTAGCA
CTGTTATTTGGAGGAGTTGATGAGAAAGGACCCCTGCTGTTTCACATGGACCCATCTGGG
ACCTTTGTACAGTGTGATGCTTGAGCAATTGGCTCTGCTTCAGAGGGTGCCCAGAGCTCC
TTGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW
MFL.RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQN.W
Retrocopy
MFLARSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNYW


Parental protein
FTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ
FTYNETMTVESVTQAVSNLALQFGEEDADPG.MS.PFGVALLFGGVDEKGP.LFHMDPSGTFVQCDA.AIGSASEGAQSSL.
Retrocopy
FTYNETMTVESVTQAVSNLALQFGEEDADPGVMSCPFGVALLFGGVDEKGPLLFHMDPSGTFVQCDA*AIGSASEGAQSSLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide