RetrogeneDB ID:
retro_mputfur_1296
Organism:
Location:
GL897071.1:3285815-3286049 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.95 %
Coverage:
60.77 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS15A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]

Genomic region (view in browser)





>retro_mputfur_1296
ATTGCCAATGATCACTAGCTGGGAAAATTGTTGTGAACCTCATGGACAGGTTAAACAAGT
GTGAATTGTTCAGCCCCTGATTTGATGCACAACTCAAAGATTTAGAAAAATGGCAGAATA
ATCTGCTCCTGTCCTGCCAGTTTGGTTTTCATTCCTGACAACCTCACTGGCATCATGGAT
CATGAAGAAACGAAACAAAAACACACAAGAGGGAAAATCTCGGGATTCTTTTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IIDDH-RAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFG-FIVLTTS-AGIMDHEEARRKHTGGKILGFFF
I..DH..AGKIVVNL..RLNKC...SP.FD.QLKDLEKWQNNLL.S.QFG.F..LTTS..GIMDHEE...KHT.GKI.GFFF
Retrocopy
IANDH/LAGKIVVNLMDRLNKCELFSP*FDAQLKDLEKWQNNLLLSCQFG/FSFLTTS/TGIMDHEETKQKHTRGKISGFFF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide