RetrogeneDB ID:
retro_mputfur_1303
Organism:
Location:
GL897075.1:999684-1000186 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
67.24 %
Coverage:
96.0 %
Frameshifts:
6
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1303
GTGAGCTCCCAGATTCATCAGAATTATTCCACCGAGGTGGAGGCTGCTGCCAACCACTTG
GTCAACAAGCGTCAGCTGGCCTCCTGCACCTACCTCTCTTTGGGCTTTTATTTCAGCCTC
ATAATGTGGCTCTGGAGGGTGTGGGCCATTCTTCTGTGAGGTGCGGTAGGAGAAGCAGGA
GGGCACTGAGGGGCTCTTGAAGATGCAAAACCAGCTGGGATGGTCACGCCCTATTCCAGG
ACATGCAGAAACCATCCCAAAATGAGTGGGTTAAAACCCTGGATGCTGTAAAAGCCACCA
TGGCCCTAGGAAGAGCCTGGACCAAACTGTTTGGGATCCACATGCCCCAGATTCTGCCTC
ACACACTTCCCTGTCTCTGTGACTTCCTGTAGAACCACTTCCTGGATGAGAAGGTGAAAT
TCATCAAGAAGATGGCAACCACCTGACTATGCTCCACAGGCTGGGTGGTTCCCAGGCTGG
GCTGGGCCAGTATCTCTTTAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSSQIRQNYSTEVEAAVNRLVNMHLRASYTYLSLGFYFDR-DDVALEGVGH-FFRELAEEKREGAERLLKMQNQRG-GRALFQDVQKPSQDEWGKTLDAM
.SSQI.QNYSTEVEAA.N.LVN....AS.TYLSLGFYF.....VALEGVGH.FF.E...EK.EG.E.LLKMQNQ.G.G.ALFQD.QKPSQ.EW.KTLDA.
Retrocopy
VSSQIHQNYSTEVEAAANHLVNKRQLASCTYLSLGFYFSL/HNVALEGVGH/FFCEVR*EKQEGTEGLLKMQNQLG\GHALFQDMQKPSQNEWVKTLDAV


Parental protein
EAALVL-EKSLNQALLDLHALGSA-RTDPHLCDFLENHFLDEEVKLIKKM-GDHLTNLRRLAGPQAGLGEYLFE
.A...L..KSL.Q...D.HA..SA..T.P.LCDFL.NHFLDE.VK.IKKM.G.HLT.L.RL.G.QAGLG.YLF.
Retrocopy
KATMAL/RKSLDQTVWDPHAPDSA\HTLPCLCDFL*NHFLDEKVKFIKKM/GNHLTMLHRLGGSQAGLGQYLFK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide