RetrogeneDB ID:
retro_mputfur_1304
Organism:
Location:
GL897075.1:1877487-1878054 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.23 %
Coverage:
69.78 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
MAPRE1
Parental gene aliases:
No gene alias available
Parental gene description:
microtubule-associated protein, RP/EB family, member 1 [Source:HGNC Symbol;Acc:6890]

Genomic region (view in browser)





>retro_mputfur_1304
TCTTTGTGGTTGAATCTGATGAAGGCTGAATAGTTGTGTTCAGGGGCTGTCTACTGTCAG
TTTATGGACACAATGCTCCCTGGCTCCATTGGTTTGAAGAAAATGAAATTCCAGGCTAAG
CTAGAACACAAATACATTCAGAACTTCAAAATGCTAAAAGCAGATTTTAAGAGAAGGGGT
GTTGACTAAATAATTCCTGTGGACAAATTAGTACAAGGGAAGTTTCAGGACAATTTTGAA
TTTTTTCTGTGGTTCAAGAAGTTTTCTAATGCAAACTGTGATGGAAAAGACTGACCCTGT
AGCTGCCCGATAAGGTCAAGAAATGTCAGTTGCTCCCTCTCTTGTTGCTCGGGCTCTGAA
CAAATAAAAAAAATCTCTTGGCTCTAGCAGTGCAGCTTCAGAGAGGCCAGTTGCAATACA
TAGATCCACTGCAACCGCTAAGGCTGGCCTTACAGGGGGAGGGTGGTGAGAAAGAATCTT
GGTGTGGGCTTCGGGGATGATGAAGGGGCTGAATTGATGCAGCAGGTCAATGTATTGAAA
CTTACTGTTGAAGACTTGGAGAAAGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLV-KGKFQDNFEFVQWFKKFFDANYDGKDYD
SL.LNL.K.E.LCSGA.YCQFMD...PGSI.LKK.KFQAKLEH.YIQNFK.L.A.FKR.GVD.IIPVDKLV.KG.F.....F......F.......K..D
Retrocopy
SLWLNLMKAE*LCSGAVYCQFMDTMLPGSIGLKKMKFQAKLEHKYIQNFKMLKADFKRRGVD*IIPVDKLV\KGSFRTILNFFCGSRSFLMQTVMEKT-D


Parental protein
PVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPK---TGPG-VVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKE
PVAAR.GQE..VAPSLVA.ALNK....L.SSSAA..RP.A.HR.TAT.K...TG.G.VVRKN.GVG.GDDE.AELMQQVNVLKLTVEDLEKE
Retrocopy
PVAAR*GQEMSVAPSLVARALNKXXXSLGSSSAASERPVAIHRSTATAKAGLTGGG/VVRKNLGVGFGDDEGAELMQQVNVLKLTVEDLEKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide