RetrogeneDB ID:
retro_mputfur_1306
Organism:
Location:
GL897075.1:2584214-2584695 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.76 %
Coverage:
80.81 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
FCF1
Parental gene aliases:
No gene alias available
Parental gene description:
FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220]

Genomic region (view in browser)





>retro_mputfur_1306
GATCCCAGTGCACTCAAGGAAAGAGAAGTCCCCCAACATCCTTCCTGCTTATTCTTCCAA
TATAACACACAGCTGGGCCCACCTTACCACATCCTGGTTGATACCAACTTTATCAACTTT
TCCATTAAAGCCAAACTTGACTTAGTACAGTCAATGATGGACTGTCTTTATGCCAAGTGT
ATCCCTTGTATAACTGACTGTGTAATGGCTGAAATTGAGAAACTGGGGCAGAAGTATCGA
GTGGCTCTAAGGATTGCCAAGGATCCAAGATTTGAACGATTACCATGCACACACAAAGGA
ACCTATGCAGATGACTGCTTAGTGCAGAGAGTAACTCAGCACAAGTGTTACATTGTGGCC
ACAGTTGACCGAGACCTTAAACGAAGGATCCGGAAGATTCCTGGAGTTCCCATCATGTAC
ATTTCTAACCATAGGTACAACATTGAGTGGATGCCAGATAGATTATGGAGCCCCTCGGTT
C


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKG
DPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKG
Retrocopy
DPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKG


Parental protein
TYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPD-DYGAPRF
TYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIE.MPD.DYGAPRF
Retrocopy
TYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIEWMPD\DYGAPRF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide