RetrogeneDB ID:
retro_mputfur_1312
Organism:
Location:
GL897077.1:620233-620573 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.74 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
PPDPF
Parental gene aliases:
No gene alias available
Parental gene description:
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]

Genomic region (view in browser)





>retro_mputfur_1312
ATGGCAACCATCCCCTCCAGCAGCTAACTCGTGGATACCCAGGACTATTACTGGCACCGC
CTGGGCTCCACTTCCAGTAATAGCCCTTCGAAGTGCAGAGTATGGTAGGGAAGTCATTCC
TCACTACCTGGGTCTCCCCAAGATCAACCTGGGTCACTGGTATGCATGCTGCTTCTTCTG
GAAGTCCACTCTCCCACTCATGGCTACAGTGTTGGAGTCCCCAGAACGTTCAGAATCTCG
CCAGGCCTCCAGCAGCACAGTCATCTGCAACTTGGCTCTGGAAGCCATGAGGAGGCTTCC
TGGTGGCCAGTCTGCCAAAGCCAACACCATACCACCATCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIPSSGSLVATHDYYRRRLGSTSSSSSCG-SAECAGEAIPHPPGLPKADPGHWWASFFFGKSTVPFMATVLESPERSEPPQASSGTITSDPAPEAVRK
MA.IPSS..LV.T.DYY..RLGST.SS.S...SAE...E.IPH..GLPK...GHW.A..FF.KST.P.MATVLESPERSE..QASS.T.....A.EA.R.
Retrocopy
MATIPSSS*LVDTQDYYWHRLGST-SSNSPS\SAEYGREVIPHYLGLPKINLGHWYACCFFWKSTLPLMATVLESPERSESRQASSSTVICNLALEAMRR


Parental protein
QPGGRPGKANVGPPS
.PGG...KAN..PPS
Retrocopy
LPGGQSAKANTIPPS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide