RetrogeneDB ID:
retro_mputfur_1315
Organism:
Location:
GL897078.1:1616415-1616877 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.71 %
Coverage:
79.8 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
FCF1
Parental gene aliases:
No gene alias available
Parental gene description:
FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220]

Genomic region (view in browser)





>retro_mputfur_1315
AATGCACTCAAAGAAAAAGACGTCCCCCAACATCCTTCTTGCTTATTCTTCCAATATTAC
ACACAGCTGGGTCCACCTTACCACATCCTGGTTGACACCAACTTTATCAACTTTTCCATT
AAAGCCAAACTTGATTTAGTACAGTCAATGATGGACTGTCTTTACACCAAGTGTATCCTT
TGTATAACTGACTGTGTAATGGCAGAAATTGAGAAACTGGGACAAAAGTATTGAGTGGCT
CTAAAGATTAACAAGGATCTAAGATTTGAAAGATTACCATGCACACACAAGGGAACCTAT
GCAGATGACTGCTTAGTACAGAGAGTAACTCAGCACAAGTGTTACATTGTGGCCACAGTC
CATCGGGACCTTAAAGGAAGGATCCAGAAGATTGCTGGAGTACCCATCATGTACATTTCT
AACCATAGTTACAACATTGATGATTATGGGGCCCTTCGGTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTY
.ALKE..VPQHPSCLFFQY.TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLY.KCI.CITDCVMAEIEKLGQKY.VAL.I.KD.RFERLPCTHKGTY
Retrocopy
NALKEKDVPQHPSCLFFQYYTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYTKCILCITDCVMAEIEKLGQKY*VALKINKDLRFERLPCTHKGTY


Parental protein
ADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF
ADDCLVQRVTQHKCYIVATV.RDLK.RI.KI.GVPIMYISNH.YNI.....DYGA.RF
Retrocopy
ADDCLVQRVTQHKCYIVATVHRDLKGRIQKIAGVPIMYISNHSYNID----DYGALRF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide