RetrogeneDB ID:
retro_mputfur_1318
Organism:
Location:
GL897079.1:4142592-4143377 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.07 %
Coverage:
94.98 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1318
GGAGCCCTTCATGTCCTACAAATGAAGGAAGAGTATGGTCCTCAAATTCCTTGCAGCAGT
AACCCACTTAGGTGGCACCAACCTTGACTTCCAAATGGAACAGTACATCTGCAAAAGGAA
AAGGGATGGTATCTACATCATAAATCTGAAAAGAACCTTGGAGAAGGTTCTTCTGGCAGC
TCATGCCTTTGTTGCCATTGCAAACCCAGCTGATGTCAATGTCATACCATCTGGGAATAC
TGGCCAGCAAGCTGTACTGAAGTTTGCTGCTGCTACTGGAGCCATTCCTATTGCTGGCCT
CTTTACTCTTAGAACCTTCACTAACCAGATCCAGGCAGCCTTCTGAGAGTCGAGACTTCT
GGTGGTTACTGATACGAGGGCTGATCACCAGCTTCTCACAGAGACAGGCTAACCTGCCTA
CCACTGCTCTGTGTTAATGAGGATGCTCCTCTGAACTCTGTGGACATCACCATCTCTTGC
AATAACAAAGGAGCTCACTCGGTGGGTCTGATGTGGTGGATGTTGGCCTAGGAAGTTCTG
CGCATGTGTGGCACCATTTCCATGGAGACCCATGGGAGGTCAAGCCTGATTTCTATTTCC
ACAGAGACCCTGAGGAGATCAAAAAGGAAGAGCAGGCTGCTGATAACTAAGCCCTGACCA
AGGAGGAATTTCAGGGTGAGTGGAATGCTCCAGCTCCAGCTCCTGAGTTCACTGCTACTC
TACCTGAAGTTACAGACTAGACTGAAGGCATGCTGGTACCTTCCCTGCTGAAGACTGGAG
TATGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GALDVLQMKEED-VLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAG
GAL.VLQMKEE..VLKFLAA.THLGGTNLDFQMEQYI.KRK.DGIYIINLKRT.EK.LLAA.A.VAI.NPADV.VI.S.NTGQ.AVLKFAAATGA.PIAG
Retrocopy
GALHVLQMKEEY\VLKFLAAVTHLGGTNLDFQMEQYICKRKRDGIYIINLKRTLEKVLLAAHAFVAIANPADVNVIPSGNTGQQAVLKFAAATGAIPIAG


Parental protein
RFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEAS-YVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISRE-HPWEVMP
.FT..TFTNQIQAAF.E.RLLVVTD.RADHQ.LTE......LP.....N.D.PL..VDI.I.CNNKGAHSVGLMWWMLA.EVLRM.GTIS.E..PWEV.P
Retrocopy
LFTLRTFTNQIQAAF*ESRLLVVTDTRADHQLLTETG/LTCLPLLCV-NEDAPLNSVDITISCNNKGAHSVGLMWWMLA*EVLRMCGTISME/DPWEVKP


Parental protein
DLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWT--APAPEFTATQPEVADWSEGVQVPSVPIQQFPTGMC
D.YF.RDPEEI.KEEQAA...A.TKEEFQGEW...APAPEFTAT.PEV.D..EG..VPS.......TG.C
Retrocopy
DFYFHRDPEEIKKEEQAADN*ALTKEEFQGEWNAPAPAPEFTATLPEVTD*TEGMLVPSL----LKTGVC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide