RetrogeneDB ID:
retro_mputfur_1319
Organism:
Location:
GL897080.1:1118387-1118772 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.31 %
Coverage:
62.62 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_1319
AGAGCACCTGCTCGCGGAAAGAAGAAGGTGGCTCGAGGAACAGCTACAGCAGATGATAAG
AAACTTCATTTCTCCTTGAAGAAGCTACAGGTTAATAATACGTCTGCTGTTGAAGAAGCG
GATTATGTTCACAAACCAAGGAATAGGGATCCACGTCCACCAGCCTCAAGGGCAGACATC
CCTGGCAGTCGACCCTTTTACCATTCCAGGTCGTGCCGGACAAAGCCACCACCAGAAACC
CTGCGTCTTAAACTGACTTGGTGCAGACACTGTGGCTCATTTAAGGAGGCTGGCTGAAGC
TCTGCCCACCCCATCTGGGGATGGAAAAGCACCACGTGCTATCAGGGAGGAGGAAGATGA
CGATGAAGTTCCAGATCTTCTGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVN-MFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRL
...AR.KKKV...TATADDKKL.FSLKKL.VNN.S..EE...MFTNQG..IH...P..Q.SLA...FTI.G.A...Q.....P..LN.LGAD....LRRL
Retrocopy
RAPARGKKKVARGTATADDKKLHFSLKKLQVNNTSAVEEAD\MFTNQGIGIHVHQPQGQTSLAVDPFTIPGRA--GQSHHQKPCVLN*LGADTVAHLRRL


Parental protein
AEALPKQSVDGKAPLA-TGEDDDDEVPDLVE
AEALP..S.DGKAP.A...E.DDDEVPDL.E
Retrocopy
AEALPTPSGDGKAPRAIREEEDDDEVPDLLE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide