RetrogeneDB ID:
retro_mputfur_1320
Organism:
Location:
GL897080.1:1643488-1644009 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.72 %
Coverage:
61.46 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1320
AAAATATATAGGTATTATCCTACTGAAGATGTACCTCGAAAGCTGTTAAGCCACGACAGA
AAACCTTTCAGTCAGCATGAGAAAACCGCAAGCTAGCATCACTCCTGGGACCATTGTCAT
CCTCACTGGGTATCACAGAGACAAGAGGGTGGTTTTCCTGAAACCAATGAGCAGTGGCTT
GCTACTTGTGACCAGACCTCTCGCCCTCAGTCGAGTTCCTCTGGTAGAACACATCAGAAA
TTTGTCATTGCTGTCTCCACCAAAATTGGTATCAGCATTATGATAATCCCAAAACACGTC
ACTGAAGCTTACTTCAAGAAGAAGCTGTATAAACCCAGACACCAGGAAGGTGAGCTCTTT
GACAGAGAGTAGAAGAAATATGAGACTACAGAGCAGCACAAGGGCAATCAGCAAACTACG
GTCTCACAAATTCTGCCAAAAACCAAAACTGTTCCGCAGCTTTAGACTACCCACACTCAG
TGTTTTCTCTCACAAATGGAATTTATCCTTACAAATTGGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMPRYYPTEDVPRKLLSHGK-KPF-SQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPL-RRTHQKFVIATSTKIDISNVK
K..RYYPTEDVPRKLLSH...K.F.S...RK..ASITPGTI..ILTG.HR.KRVVFLK..SSGLLLVT.PL.L.RVPL..RTHQKFVIA.STKI.IS...
Retrocopy
KIYRYYPTEDVPRKLLSHDR/KTF/SVSMRKPQASITPGTI-VILTGYHRDKRVVFLKPMSSGLLLVTRPLALSRVPL/GRTHQKFVIAVSTKIGISIMI


Parental protein
IPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQL-QGYLRSVFSLTNGVYPHKLV
IPKH.T.AYFKKK.L.KPRHQEGE.FD.E..KYE.TEQ.K..Q....SQILPK.K.VPQL...Y..SVFSLTNG.YP.KLV
Retrocopy
IPKHVTEAYFKKK-LYKPRHQEGELFDRE*KKYETTEQHKGNQQTTVSQILPKTKTVPQL/LDYPHSVFSLTNGIYPYKLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide