RetrogeneDB ID:
retro_mputfur_1329
Organism:
Location:
GL897083.1:727736-728306 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.25 %
Coverage:
99.48 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1329
TCGGCTAGGAGGAGGCAAAGGTATAACTGCCTTGGGTCATCCCGAAACCAGGTTCATCCA
ACACCAGCCACCTCTGCCATGCAGCCTAAGTTCGACCTCAAAGAGATCCAAGTCGTGGTT
CTGAGGTGCATCGGTGGTGAAGTCGGTGCCACGTCTGCCCTGACCCTGAAGATCATCTCA
CTGGGTCTTTCTCCATAAAAGGCTGGTGATGACATTGTCAAGGCGACTGGTGATAGGAGG
GATCTAAGGATTGCCGTGAAACTGACCATTCAGAACAGACAGTCCCAGATTGAAGTGGTA
CCTTCTGCCTCTTCGCTGATTATCAAAGCTCTCAAGGAACCACCAAGAGACAGAAAGAAG
CAGAAAAACATAAAGCACAGTAGAAATATAATTTTTAATGAGATTGTCAATATTGCTTGC
CAGATGTGACATCGATCTTTAGCCAGAGAACTTTCTGGAACCATTAGAGAGATTCTGGGG
ACTGCCCAGTCTGTGGGCTGTAATGTTGATGGCTGCCACCCTTATGACATCATAGATGAC
GTCAACAGTGGTGCAGTGGAATGCCCAGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SARRRQRCNSLRSSRIRVHPTPATSAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVV
SARRRQR.N.L.SSR..VHPTPATSAM.PKFD..EI.VV.LRC.GGEVGATSAL..KI..LGLSP.K.GDDI.KATGD...LRI.VKLTIQNRQ.QIEVV
Retrocopy
SARRRQRYNCLGSSRNQVHPTPATSAMQPKFDLKEIQVVVLRCIGGEVGATSALTLKIISLGLSP*KAGDDIVKATGDRRDLRIAVKLTIQNRQSQIEVV


Parental protein
PSASALIIKALKEPPRDRKKQKNSAVKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA
PSAS.LIIKALKEPPRDRKKQKN...KHS.NI.F.EIVNIA.QM.HRSLARELSGTI.EILGTAQSVGCNVDG.HP.DIIDD.NSGAVECPA
Retrocopy
PSASSLIIKALKEPPRDRKKQKN--IKHSRNIIFNEIVNIACQM*HRSLARELSGTIREILGTAQSVGCNVDGCHPYDIIDDVNSGAVECPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide