RetrogeneDB ID:
retro_mputfur_1330
Organism:
Location:
GL897083.1:3583443-3583965 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.33 %
Coverage:
62.76 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1330
GTCAACCATCCACAGGTGTCTGCACTGCTCGGGGAGGGGGATGAAGAGATGCTGAGCCGA
GGTGACAGAACTCGAAGATATGAAATCAGGTAGGTTTCAGAACAGATTTTTACTTTGATG
AAATCTCTTCCTTCAAAAATAAAGTTCTCTCCAAAGAATTTCATCTGACCGAGAGTGGTG
ATTTCCTCTTCCAAGTCCACTGAAATCAAATGGAAATCCAGAAAGGATTTGATGAAACAT
ACAGGTCCAAAACAGAATGGAGTCAGCAGGAAGAGACTGCATGACGAGCCCGAGAGCTTC
TTCCCCTGGTTTCCTGATGATTCCGATGCCGTTGCAGATGAACCAGCAGAGGTCATTGAA
GATAACACTTGGCCAAATCCATGACTGCACTACTTTGTTCTCGATATGGATGATGAAGGA
GGGGAAGAAGAAGTAGATGGTGATGAAGAAGGAGGATTGGAAGATATTGATGAAGGGGAG
GAGGAAGGAGAAACTGAGTCATGGAACAGTCATGGATCCCAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VNHPQVSALLGEEDEEALHYLTRVEVTEFEDIK-SGYRIDFYFDENPYFENKVLSKEFHLNESGD-PSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHE
VNHPQVSALLG.E..E....L.R...T....I...G.R.DFYFDE...F.NKVLSKEFHL.ESGD..SSKSTEIKWKS.KDL.K.....QN..SRKR.H.
Retrocopy
VNHPQVSALLG-EGDEEM--LSRGDRTRRYEIR/VGFRTDFYFDEISSFKNKVLSKEFHLTESGD\SSSKSTEIKWKSRKDLMKHTGPKQNGVSRKRLHD


Parental protein
EPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEE
EPESFF.WF.D.SDA.ADE..EVI.D..WPNP...Y.V.DMDDE.GE.E.D.D...EE.GLEDIDE...E.EGE.......G..
Retrocopy
EPESFFPWFPDDSDAVADEPAEVIEDNTWPNP*LHYFVLDMDDEGGEEEVDGD---EEGGLEDIDE--GEEEGETESWNSHGSQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide