RetrogeneDB ID:
retro_mputfur_1334
Organism:
Location:
GL897084.1:2239695-2240020 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.91 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPLP1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]

Genomic region (view in browser)





>retro_mputfur_1334
ATGGCCTCCTTCTCGGAGTAAGCCTCCATCTACTTGGCCCTCATCCTGCCTAACAATGAG
GTGACAGTCACGGAAGATAAGATCAATGTCCTCACTAAAGCAGTGGGTTAACATGTGGAA
TATTTCTGGCCAGGCTTGTCTGCGGGGGCCCAGGCCAATGTCAACATCAAGATCCTCAGC
AGCAAGGTAGAGGCTAGGGGGATCTACACCAGCAGGAGATCCCGCTCCCCCCTCCACAGC
TACCCCAACTGAGGAGAAGGAGCTAGAAACAAAGGAAGAAGAATCGGAAGAGTTTGGTGA
TGACATAGGCTTTGGTCCTTTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA-GGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE
MAS.SE.A.IY.ALIL...EVTVTEDKIN.L.KA.G..VE.FWPGL.A.A.ANVNI..L...V.A.GG..PA...AP...P...T.....E....E...E
Retrocopy
MASFSE*ASIYLALILPNNEVTVTEDKINVLTKAVG*HVEYFWPGLSAGAQANVNIKILSSKVEA\GGSTPAGDPAP---PSTATPTEEKELETKEEESE


Parental protein
ESEESDDDMGFGLFD
E.....DD.GFG.FD
Retrocopy
E---FGDDIGFGPFD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide