RetrogeneDB ID:
retro_mputfur_1336
Organism:
Location:
GL897086.1:2989897-2990689 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.74 %
Coverage:
96.7 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1336
CCCCAGCCCGACTCTGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGATCCAAAG
GAACCAGAGCAGTTGGGAAAACTGTTTATTGGTGGTTTGAGCTTTGAAACTACAGATGAT
AGTTTAAGAGAACATTTTGAAAAATGGGGTACACTTACAGATTGTGTGGTGATGAGAGAC
CCCCAAACAAAACGTTCCAGGGGTTTTGGTTTTGTGACTTACTCTTGTGTTGAAGAGGTG
GATGCAGCAATGTGTGCCCGACCACACAAGATTGATGGGCGTGTAGTGGAACCAAAGAGA
GCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACGGTGAAGAAAATTTTT
GTTGGTGGTATTAAAGAAGATACAGAAGAGTATAATTTGAGAGACTACTTTGAAAAGTAT
GGCAAGATTGAAACCATAGAAGTTATGGAAGACAGGCAGAGTGGAAAAAAGAGAGGATTT
GCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAAATACCAC
ACTATTAATGGGCATAATTGTAAAGTGAAAACAATTATTTCTAAACAAGAAATGCAGTCT
GCTGTATCACAAAGAGGTCGTGGAGGTGGATCTGGCAACTTCATGGGTCGTGGAGGGAAC
TTTGGAGGTGGTGGTAACTTTGGCCGTGGTGGAAACTTTGGTGGAAGAGGAGGCTACGGT
GGTGGTAGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAATGGATTT
GGAGGTGATGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PPPSSAARKESAGLEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKR
P.P.S..R....G.EGHDPKEPEQL.KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHK.DGRVVEPKR
Retrocopy
PQPDSGRRRRRRGEEGHDPKEPEQLGKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKIDGRVVEPKR


Parental protein
AVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS
AVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNC.VK...SKQEMQS
Retrocopy
AVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCKVKTIISKQEMQS


Parental protein
AGSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDG
A.SQRGRGGGSGNFMG..................GRGGYGGG.GGSRGSYGGGDGGYNGFGGDG
Retrocopy
AVSQRGRGGGSGNFMGXXXXXXXXXXXXXXXXXXGRGGYGGGSGGSRGSYGGGDGGYNGFGGDG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide