RetrogeneDB ID:
retro_mputfur_1339
Organism:
Location:
GL897088.1:1910495-1911333 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.65 %
Coverage:
95.21 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
ESD
Parental gene aliases:
No gene alias available
Parental gene description:
esterase D [Source:HGNC Symbol;Acc:3465]

Genomic region (view in browser)





>retro_mputfur_1339
AGACAGATTTCCAGCACCACGTGCTTTGGAGGATTGCAGAACGTTTTTGAACATGACAGT
GTTGGACTGAACTGCCAAGTGAAATTTGCTATCTTACTTACCACCCGAGTCAGAAGCTGG
AAAACGTCCTGCGCTGCATGGTTATCTGGTTTAACTTGCATGGAACAAAATTTTATATCA
AAGTCTGGTTATCATCAAGCTGCCGCTGAACATGGCCTTGTCGTCCTTTCTCCAGATGAC
AGCCCTCCTGGCTGCAGTATTACAGGAGAAGACAAGAGCTAGGACTTTGGCACTGGTGCT
GGGTTTCGAAGTAGATGCCACTGAAAATCCTTGGAAAATGAACTATAGAATGTACTCTTA
TGTAACGGCAGAGCTTCCCCATCTCATAAATGCCAGTTTTGCAATGGACCCCCTAAAGGA
GGTCTATTTTTGGCCACTCTAGGGGAGGCCACAGAGCTCTGATATGGGCTTTGAAGAATC
CTGGAAAGTCCAAGTCTGTGTCAGCATTTGCTCCAATTTGCAACTCAGCGCTCTGTCCTT
GGGGGGGGGGAAAAATTTTTAGCGGATATTTGGGAACAGATCAAAGTAAATGGAAGGCTG
ATGTTGCTACCCATCTTGTGAAGTCCTATCCAGGTGTTCAGCTGGACATACTACTTGATC
CAGGAAAAGTGGCCAGTGGCCTACAGATGGACAATTACTACCTGATAACTTCTTAGCTGT
CAGTACAGAAAAGAAAGTCCCTTTTGTTTTCAGATTACAAGAGGGTTATGATCATAGCTA
CTACTTCATTGCAGTCTTTAGTACTGAGCACATCAGACATCATGCAAAATACCTGAAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KEISSNKCFEGLQKVFEHDSVELSCKMKFGI-YLPPKAETEKCPALY-WLSGLTCTEQNFISKAGYQQAASEHGLIIIAPDTSPRGCSIKGEDESWDFGT
..ISS..CF.GLQ.VFEHDSV.L.C..KF.I.YLPP..E..K.PAL..WLSGLTC.EQNFISK.GY.QAA.EHGL....PD.SP.GCSI.GED.S.DFGT
Retrocopy
RQISSTTCFGGLQNVFEHDSVGLNCQVKFAI\YLPPESEAGKRPALH/WLSGLTCMEQNFISKSGYHQAAAEHGLVVLSPDDSPPGCSITGEDKS*DFGT


Parental protein
GAGF-YVDATEDPWKTNYRMYSYVTEELPRLINANFPVDPQ-RMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCP-WGKKAFSGYLGTDQSK
GAGF..VDATE.PWK.NYRMYSYVT.ELP.LINA.F..DP..R.SIFGHS.GGH.ALI.ALKNPGK.KSVSAFAPICN..LCP....K.FSGYLGTDQSK
Retrocopy
GAGF\EVDATENPWKMNYRMYSYVTAELPHLINASFAMDPL\RRSIFGHSRGGHRALIWALKNPGKSKSVSAFAPICNSALCPXXXXKIFSGYLGTDQSK


Parental protein
WKAYDATHLVKSYPGSQLDILIDQG-KDDQFLTDGQLLPDNFIAACTEKKVPVVFRLQEGYDHSYYFIATFITDHIRHHAKYLN
WKA..ATHLVKSYPG.QLDIL.D.G.K..Q..TDGQLLPDNF.A..TEKKVP.VFRLQEGYDHSYYFIA.F.T.HIRHHAKYLN
Retrocopy
WKADVATHLVKSYPGVQLDILLDPG/KSGQWPTDGQLLPDNFLAVSTEKKVPFVFRLQEGYDHSYYFIAVFSTEHIRHHAKYLN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide