RetrogeneDB ID:
retro_mputfur_1340
Organism:
Location:
GL897088.1:1385361-1386256 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.68 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1340
ATGTCTCTGTACCCATCTCTTGAAGACCTGAAGGTAGACAAAGTTATTCAGGCTCAAACT
GCCTTTTCTGCAAACCCTGGCAACCAAGCAATTTTGTCTGAAGCTTCTGCTCCCATCTCT
CGAGATGGAAATCTCTATCCTAAATTGTATCCGGAGCTCTCCCAGTACATGGGCCTGAGT
TTAAATGAAGAAGAAATCCATGCAAATATGGCCGTGGTCCCTGGAGCACCAGTTCAGGGG
CAGTTGGTGGCAAGACCTTCTAGTATGAACTATATGGTGGCTCCTGTAACTGGTAATGAT
GTTGGAATTCATAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGAT
CAAGATGGAAAAATTGGGCTCAGGCTTAAATCAATAGATAATGGCATATTTGTTTATCTG
GTCCAGGCAAATTCTCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTCCAG
ATCAATGGGGAAAACTGTGCAGGCTGGAGCTCTGATAAAGCACACAAGGTACTCAAACAG
CTTTTGGAGAGAAGATTACTATGACTGTTCGTGACAGGCCCTCTGAACGGACAGTTACCA
TGCATAAGGATAGTACTGGACATGTTGGCTTTATCTTTAAAAATGGAAAGATAACATCCA
TAGTGAAAGATAGTTCTGCAGCCAGAAATGGTCTTCTCACAGAACATAACATCTGTGAAG
TCAATGGGCAGAGAATGTCATTGGGCTGAAGGATTCTCAAATTGCAGACATATTGTCAAC
ATCTGAGACTGTAGTTACTATTACAATCATGCCTGCTTTTATCTTTGAATATATTATTAA
ACGGATGGCACCAAGCATTATGAAAAGCCTGATGGATCATACCATTCCTGAGGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSLYPSLEDLKVDKVIQAQTAFSANPGNPAILSEASAPISQDGNLYPKLYPELSQYMGLSLNEEEIRANMAVVPGAPVQGQLVARPSSMNYMVAPVTGND
MSLYPSLEDLKVDKVIQAQTAFSANPGN.AILSEASAPIS.DGNLYPKLYPELSQYMGLSLNEEEI.ANMAVVPGAPVQGQLVARPSSMNYMVAPVTGND
Retrocopy
MSLYPSLEDLKVDKVIQAQTAFSANPGNQAILSEASAPISRDGNLYPKLYPELSQYMGLSLNEEEIHANMAVVPGAPVQGQLVARPSSMNYMVAPVTGND


Parental protein
VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ-AFGEKITMTVRDRPFERTV
VGI.RAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFV.LVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ.AFGEKITMTVRDRP.ERTV
Retrocopy
VGIHRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVYLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ/AFGEKITMTVRDRPSERTV


Parental protein
TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEVNGQNV-IG-LKDSQIADILSTSETVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPE
TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEVNGQ....G.LKDSQIADILSTSETVVTITIMPAFIFE.IIKRMAPSIMKSLMDHTIPE
Retrocopy
TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEVNGQRMSLG/LKDSQIADILSTSETVVTITIMPAFIFEYIIKRMAPSIMKSLMDHTIPE


Parental protein
V
V
Retrocopy
V


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide