RetrogeneDB ID:
retro_mputfur_1342
Organism:
Location:
GL897089.1:2604375-2604827 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.58 %
Coverage:
94.38 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_1342
ATGACCAACACAAAGGGAAAAAGGAGAAGTGCCCACTATATGTTTTCTAGGCCTTTTAGA
AAACATGGAGTTATTCCTTTGGCCACATATATGGGAATCTACGAGAAAGATGATATTGGG
GACATGAAGAAAATGGACACTGTTCTAAAAGGCATGTCCCACAAATGTCACCATGACAAA
CTGGAAGAGTCTACAATGCTACTCAACATGCTATTGGCATTGTTGTAAACAAACAAATTA
AGGGCAAGATTCTTGCCAAGAGTATTAATGTATGCATTGAGCATATTAAACACTCAAAGA
GCTGAGATAGCTTCCTGGAACGTGTGAAGGAATAAGACCAGAAAAAGAAGGAAGCCAAAG
AGAAAGGTACTTGAGTTCAATTGAAGTGCCAGCCTGCCCCACCCAGAGAAACACATTTTG
TGAGAACCAGTGGAAAGGAGCCTGAACTGCTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK-TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHS
MTNTKGKRR...YMFSRPFRKHGV.PLATYM.IY.K.DI.D.K.M.TV.KGM.HKC.H.K.TGRVYN.TQHA.GIVVNKQ.KGKILAK.INV.IEHIKHS
Retrocopy
MTNTKGKRRSAHYMFSRPFRKHGVIPLATYMGIYEKDDIGDMKKMDTVLKGMSHKCHHDK/TGRVYNATQHAIGIVVNKQIKGKILAKSINVCIEHIKHS


Parental protein
KSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELL
KS.DSFL.RVKE.DQKKKEAKEKGT.VQLK.QPAPPRE.HFVRT.GKEPELL
Retrocopy
KS*DSFLERVKE*DQKKKEAKEKGT*VQLKCQPAPPRETHFVRTSGKEPELL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide