RetrogeneDB ID:
retro_mputfur_1345
Organism:
Location:
GL897089.1:2995713-2996192 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.46 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_1345
ATGACCAACACAAAGGGAAAGAGGAAATGTACCCACTCTATATTCCCTAGGCCTTTTAGA
AAACATGCAGTTGTTGCTTTGGCCACATACATGTGTATCTACAATAAAAGTGATATTGCA
AACATCATGGGAATAGGCACCATTCAAAAAAGAATGTCCCACAAATGTCATCATAGCAAA
ACTGGAAGAGTCTACAGTGTCACTCAGCATGCTGTTGGCATTGTTGTAAACAGATAAGTT
AAGGGCAAGATTCTTGCCAAGAGAAATAATGTATGTGTTAAGCATATTAAGCACTCTAAG
AGCCAAGATAGCTTCCTGAAGTGTGTGAAGGAAAATGATCCAAAAAAGAAGGAAGCCAAA
GTGAGAAAGGTAGTTGGGTTCAACTGAAATGCCAGTCTGCCCCACCCAGAGATGAACATT
TGGTAAGAACCAATGGAAAAGAGCCTGAGCTATTAGAGCTCATCTATGAATTCATGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
MTNTKGKR..T...F.RPFRKH.VV.LATYM.IY.K.DI..I.G.GT.QK.M.HKC.H.KTGRVY.VTQHAVGIVVN..VKGKILAKR.NV...HIKHSK
Retrocopy
MTNTKGKRKCTHSIFPRPFRKHAVVALATYMCIYNKSDIANIMGIGTIQKRMSHKCHHSKTGRVYSVTQHAVGIVVNR*VKGKILAKRNNVCVKHIKHSK


Parental protein
SRDSFLKRVKEND-QKKKEAK-EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
S.DSFLK.VKEND.QK....K.EKG.WVQLK.Q.APPR..H.VRTNGKEPELLE.I.YEFMA
Retrocopy
SQDSFLKCVKEND\QKRRKPK\EKGSWVQLKCQSAPPRDEHLVRTNGKEPELLELI-YEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide