RetrogeneDB ID:
retro_mputfur_1349
Organism:
Location:
GL897091.1:2353218-2353770 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.87 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1349
AAAATGGTTCGCGATTCACTTGACCCAGAGAACCCTGTAAAATCATACAAATCAAGAGGT
TCAAATCTTCGTGTTCACTTTAAGAACACATGTGAAACTACCCAGGCCATCAGGGGTATG
CAGATCCAAAAAGCCACCAAGTATTGAAGGATGTCACTTCGCAGAAACAATGTGCACCAT
TCTGTCACTACAATGGGGGAGTTGGTAGATGTCCCCAGGCCAAACAGTGGGGCTGGACAC
AGGGTCGGTGGCCCCAAAAGAGTGCAGACTTTGGACTTTGCATGCTTAAAAATGCAGAGT
CATGCTGAACTTCAGGGTTTAGATGTAGATTGTCTGATGATTGAGCACACCTAGGTGGAC
AAAGTCCCCAAGATGCCACGCAGAAGTTACACGGCTCATCGTTAGATCCACCCACACATG
ACGACTCCCTGCCACGCTGACGTGATCCTTACAGAAAAAGAGCAGATTGTACCTAAACCA
GAAGAGGAAGTTGCACAGAAGGAAAAAATATTCCAGAAGAAAATGAAGAAGCAAAAACTT
ACAGCCTGGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKY-LKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHM-LKN
KMVR.SLDPENP.KS.KSRGSNLRVHFKNT.ET.QAI.GM.I.KATKY.LKDVT.QKQC.PF..YNGGVGRC.QAKQWGWTQGRWP.KSA.F.L.M.LK.
Retrocopy
KMVRDSLDPENPVKSYKSRGSNLRVHFKNTCETTQAIRGMQIQKATKY/LKDVTSQKQCAPFCHYNGGVGRCPQAKQWGWTQGRWPQKSADFGLCM\LK-


Parental protein
AESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE
..S.AEL.GLDVD.L.IEH..V.K.PKM.RR.Y.AH..I.P.M..PCH...ILTEKEQIVPKPEEEVAQK.KI.QKK.KKQKL.A.E
Retrocopy
MQSHAELQGLDVDCLMIEHT*VDKVPKMPRRSYTAHR*IHPHMTTPCHADVILTEKEQIVPKPEEEVAQKEKIFQKKMKKQKLTAWE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide