RetrogeneDB ID:
retro_mputfur_1351
Organism:
Location:
GL897093.1:2384574-2385479 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.18 %
Coverage:
76.13 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1351
GATTCTGGAAGACTAACATTACTGGTTGTCTGATCTATAAATGTGGTGGAATTGACAAAA
GAACTATTCAAAAATTTGAGAAGAAGGCTGCTGAGAAGGGAAAGGGCTCCTTCAAGTATG
CCTGGGTCTTGGATAAACTTAAAGCTGAACATGAATGTGGTATCACCATTGATATCTCCC
TGTGGAAATATGAGATGAACAAAGTATTATGTGACCATCAATGATGTCCCAAGACGCAGA
GCCTTTGTGAAAAATATAATTACAAGCACATCTTGGGCTTTCTGTGCTGTCCTGATTGCT
GCCACTGGTGTTGGTGAATTTGAAACCAGTGTCTCCAAGAACTGGCAGATTTGTGAGCAT
GACTTCTGGCTTACACACTAGGTGTAAAACAATTAATTATCAGTGTTAACAAAATGGATG
CCACTGAGCCACCCTACAGCCAGAAAAGATATGAAGAAATCATTAAGGAAGTTGGCACTT
ACATTAAAAAATTGGCTACAACCCCAGCAGTAGCATTTATGCCAGTTTCTGGTTGGAATG
GTGACAACATGCTGGAACCAAACACTATCATGCCTTGGTTCTAGGGATGGAAATTCACCC
GTAAAGATGGGAATGCCAGTGGAACCACAGTGCTTGACGTTCTGGGTTGCGTTCTGCCAC
CAATTTATCCAACTGACAAGCTCCTGTGTCTGCCTCTCCGGGACATCTACAAAGTTGGTG
GCATTAGTACTGTCCCTGTGGGCTGAGTGGAGTCTGGTGTTGTTAAACCTGTCATGGTGG
TTATCTTTGCTCCAGTCAATGTTACAATTGAAGTAAAGTTTATTGAAATGCACCATGAAA
CTTTGAGTGAAGTTCTTTCTGGGGACAATACGGGCTTCGGTGTCCAGAACGTATCTGTCA
AAGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DSG-KSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVL
DSG.K...TG.LIYKCGGIDKRTI.KFEK.AAE.GKGSFKYAWVLDKLKAE.E.GITIDISLWK.E..K.YYVTI.D.P..R.F.KN.IT.TS.A.CAVL
Retrocopy
DSG/KTNITGCLIYKCGGIDKRTIQKFEKKAAEKGKGSFKYAWVLDKLKAEHECGITIDISLWKYEMNK\YYVTINDVPRRRAFVKNIITSTSWAFCAVL


Parental protein
IVAAGVGEFEAGISKNGQTREHA-LLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKG
I.A.GVGEFE...SKN.Q..EH..LLAYTLGVKQLI..VNKMD.TEPPYSQKRYEEI.KEV.TYIKK....P..VAF.P.SGWNGDNMLEP...MPWF.G
Retrocopy
IAATGVGEFETSVSKNWQICEHD/LLAYTLGVKQLIISVNKMDATEPPYSQKRYEEIIKEVGTYIKKLATTP-AVAFMPVSGWNGDNMLEPNTIMPWF*G


Parental protein
WKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVK
WK.TRKDGNASGTT.L..L.C.LPP..PTDK.L.LPL.D.YK.GGI.TVPVG.VE.GV.KP.MVV.FAPVNVT.EVK..EMHHE.LSE.L.GDN.GF.V.
Retrocopy
WKFTRKDGNASGTTVLDVLGCVLPPIYPTDKLLCLPLRDIYKVGGISTVPVG*VESGVVKPVMVVIFAPVNVTIEVKFIEMHHETLSEVLSGDNTGFGVQ


Parental protein
NVSVKD
NVSVKD
Retrocopy
NVSVKD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide